Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01438 ATGGCTGACTTCACTCCGAACTTTCAAAGCTTAAAACCATCATCTTTCCCTCTAATGGATTTAGATCCCGTCCAAAACCCAAATCTTAATTTTCTTGACAACATTCCAATTTTGTTCAGTGATAGTTTCTTTAACAGTCAAACTGCTGTTCCTTCTCCTAGATTCCTAGAAAATTGGGGAGAAAATTTCCAAGGAATTTTCTCTCATCAAGCCAATCAGATCATAACTCCCATTTCTTCTCCTGTTTTTGAGCCTAAAAATCCATTTGGAAATGACCTCCATGGAAGCAAGAAAAGAAAGCTTGAAAATAATGATGCATATGAAAGCAGCTCTGGCAACTCAACCCCTCAAGTTTCTGAAAATAGGATCAACACAAAAAATAACAATGGAAAAGGGAAGCGGTCGAAAAAAGGCAACACAAACGACGATGGCGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGACAGTCATAGTGTAGCAGAAAGGATAAGAAGAGGCAAAATCAATGAAAGATTGAGATGTTTACAAGACATTGTTCCTGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAATCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATCATGACTTCAACTCTGACTCAGATGCTGAAGACAAACTGAAGGGAAAGGAAATGAGAGAAGGAAATGGAGGATCAATGATTGGATCATCAACTCAACTTGGTCCCTTTGACTTGTGCTTTGGTTCTTCTTATTCAACATTGCCATTCAACTCCATATGA 837 38.83 MADFTPNFQSLKPSSFPLMDLDPVQNPNLNFLDNIPILFSDSFFNSQTAVPSPRFLENWGENFQGIFSHQANQIITPISSPVFEPKNPFGNDLHGSKKRKLENNDAYESSSGNSTPQVSENRINTKNNNGKGKRSKKGNTNDDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAEDKLKGKEMREGNGGSMIGSSTQLGPFDLCFGSSYSTLPFNSI* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18379377 18380842 + Chy12G220380.1 Chy12g01438 239219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01438 278 MobiDBLite consensus disorder prediction 106 128 - -
Chy12g01438 278 PANTHER TRANSCRIPTION FACTOR BEE 1 2 247 - -
Chy12g01438 278 CDD bHLH_AtBPE_like 149 234 - -
Chy12g01438 278 Gene3D - 156 228 IPR036638 GO:0046983
Chy12g01438 278 MobiDBLite consensus disorder prediction 231 245 - -
Chy12g01438 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 227 IPR036638 GO:0046983
Chy12g01438 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 209 IPR011598 GO:0046983
Chy12g01438 278 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 247 IPR024097 GO:0006355
Chy12g01438 278 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Chy12g01438 278 MobiDBLite consensus disorder prediction 231 254 - -
Chy12g01438 278 MobiDBLite consensus disorder prediction 103 150 - -
Chy12g01438 278 MobiDBLite consensus disorder prediction 135 150 - -
Chy12g01438 278 SMART finulus 165 215 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02357 Chy12g01438 CCT
Chy02g02357 Chy12g01438 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01369 Chy-Chr6:13778461 Chy12g01438 Chy-Chr12:18379377 1.67E-41 dispersed
Chy12g01438 Chy-Chr12:18379377 Chy01g01416 Chy-Chr1:19575646 1.21E-37 dispersed
Chy12g01438 Chy-Chr12:18379377 Chy02g02357 Chy-Chr2:27456766 1.49E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18897 PF00010 HLH 5.40E-05 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01438 - - csv:101213736 503.056