Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01448 ATGTCCACTTCCTCGTCTCCGACCACAGACCAGCCGGCTTTAGATGACAAGAAGCCCGCGCCGCCGCCGAAGCCATGGCTCATCGTCGGCCTCGGAAATCCCGGGAAGAAGTACGATCGTACGCGCCATAATGTAGGTTTTGAGATGGTGGATGCTGTAGCTGAAGCTGAAGGGATATCCATCAGTAATGTTTCCTTCAAAGCTCTAATAGGGAAGGGTTTCATTGGGGATGTTCCTGTAATGCTTGCTAAACCACAAACTTTCATGAATGCAAGTGGTGAGTCAGTCGGTGCTATTGTTTCCTACTATAAGATTCCATTGAAGCAAGTACTTGTGATTTTTGATGACTTGGATTTGCCTTTTGCCAAATTGCGGATGCTACCGAAGGGTGGCCATGGAGGGCATAATGGAATGAGGAGTATTATTGATCATTTCAAAGGCAGTCGTGATTTCCCTCGATTAAGAATTGGCATAGGGAGACCTCCCGGGAAAATGGATGCAGCGAATTTTGTTCTTCGCCCCTTCAACAAACAAGAACGAGAAGAGACTTACCATGGAGTGACGCGCAGCTTGGAGTTGGTCGCAGAGATGGTGGAGCAGTGGAAAGAAGTTATCATAGGATTTTGTGCAGCCTCTGCTATTGGAATAGCAACAGTATCTGTTCATATCAAAACTGAGCTTCCAAATTCCTTTCAGCTTCTATCCATTGCGATTTTACCCTGTTTTGTGTGTATTGTCTCTGCAAGAATAGTGAACTACATTTCTGGAACACTCTCAAATATCCTATATTGTGTTGGAGGAATTTTGTGTGACTCAAGCTGTTTCCTCGCTACAGCCATCCCATACGGTACACACTTTCATATCATTGTTCTTGTTCTTTATACAATCTTCATCATCTTCATCATCTTCATCATCTTCATCATCTTCATCATCTTCATCTCCATCACTCTCAATAACCCCTCATCACCTGCCTCCTCCAATACCCCAATTCCTCTTTGA 999 44.44 MSTSSSPTTDQPALDDKKPAPPPKPWLIVGLGNPGKKYDRTRHNVGFEMVDAVAEAEGISISNVSFKALIGKGFIGDVPVMLAKPQTFMNASGESVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRMLPKGGHGGHNGMRSIIDHFKGSRDFPRLRIGIGRPPGKMDAANFVLRPFNKQEREETYHGVTRSLELVAEMVEQWKEVIIGFCAASAIGIATVSVHIKTELPNSFQLLSIAILPCFVCIVSARIVNYISGTLSNILYCVGGILCDSSCFLATAIPYGTHFHIIVLVLYTIFIIFIIFIIFIIFIIFISITLNNPSSPASSNTPIPL* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18461481 18466744 + Chy12G220480.1 Chy12g01448 239229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01448 332 PANTHER PEPTIDYL-TRNA HYDROLASE 21 200 IPR001328 GO:0004045
Chy12g01448 332 TIGRFAM pth: aminoacyl-tRNA hydrolase 27 196 IPR001328 GO:0004045
Chy12g01448 332 MobiDBLite consensus disorder prediction 1 26 - -
Chy12g01448 332 Pfam Peptidyl-tRNA hydrolase 27 200 IPR001328 GO:0004045
Chy12g01448 332 PANTHER PEPTIDYL-TRNA HYDROLASE CHLOROPLASTIC 21 200 - -
Chy12g01448 332 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 131 141 IPR018171 GO:0004045
Chy12g01448 332 Hamap Peptidyl-tRNA hydrolase [pth]. 25 203 IPR001328 GO:0004045
Chy12g01448 332 Gene3D - 13 208 IPR036416 GO:0004045
Chy12g01448 332 SUPERFAMILY Peptidyl-tRNA hydrolase-like 25 200 IPR036416 GO:0004045
Chy12g01448 332 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 38 51 IPR018171 GO:0004045
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01448 K01056 PTH1, PTRH1, pth, spoVC; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] - csv:101211885 360.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00605 Chy-Chr4:6709233 Chy12g01448 Chy-Chr12:18461481 1.17E-42 dispersed
Chy06g01422 Chy-Chr6:15001104 Chy12g01448 Chy-Chr12:18461481 7.20E-67 dispersed
Chy12g01448 Chy-Chr12:18461481 Chy12g01469 Chy-Chr12:18639922 3.25E-32 dispersed
Chy12g01448 Chy-Chr12:18461481 Chy05g01443 Chy-Chr5:18311018 2.95E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g347 . Blo16g00141 . . . Bpe13g00341 Bma06g00002 . . Cmo18g00031 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00169 Csa01g00653 Chy12g01448 Cme12g01888 . . . Bda14g00913 . Bpe15g00544 Bma03g00889 . . . . . Cma18g00036 . Car18g00030 Cpe09g01144 . Bhi08g01217 Tan05g2282 . Lac10g0222 . . . Cla04g01104 Cam04g1157 Cec01g1667 Cco01g1713 Clacu04g1184 Cmu04g1164 Cre01g1462 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004590 1 5 0 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 3 1 40