Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01450 ATGGAAGCTGCAATTTGCGGTCGAGTACCTCTTTCACCCAACCAATTCTTCACCTCAACCAAGCCAGGGGATAAATACTGTTTTCATAAACAATGTAGAAACCGGAGTGCCTTAATGATGATATCAGTTGCTGAGCTTGGAAAAGGCGGGGGGTTGTTGGAAAAACCAACAATAGAGAAGACAACTCCAGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAGGAAAACTTCTCCACCTTATCGAGTGTTGCTACATAATGACAATTTCAACAAGCGGGAATATGTTGTTCAAGTTCTGATGAAGGTGATTCCTGGAATGACACTTGACAATGCAGTCAACATAATGCAGGAAGCGCATTACAATGGGATGGCAGTGGTAATTATCTGTGCTCAAGTAGACGCAGAAGATCACTGCATGCAGCTTAGAGGCAATGGCCTTCTCAGTTCAATCGAGCCTGCAAGCGATGGTTGTTGA 477 43.82 MEAAICGRVPLSPNQFFTSTKPGDKYCFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC* 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18479892 18482077 - Chy12G220500.1 Chy12g01450 239231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01450 158 Hamap ATP-dependent Clp protease adapter protein ClpS [clpS]. 61 155 IPR022935 GO:0006508
Chy12g01450 158 PANTHER ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS 1 158 - -
Chy12g01450 158 Gene3D - 75 153 IPR014719 -
Chy12g01450 158 PANTHER ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC 1 158 IPR022935 GO:0006508
Chy12g01450 158 Pfam ATP-dependent Clp protease adaptor protein ClpS 76 144 IPR003769 GO:0030163
Chy12g01450 158 SUPERFAMILY ClpS-like 75 152 IPR014719 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01450 K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS - csv:101211403 311.612
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g01123 Chy-Chr10:16251312 Chy12g01450 Chy-Chr12:18479892 2.16E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g351 . Blo16g00142 . . . Bpe13g00340 Bma06g00003 . Cmo13g01076 Cmo18g00030 . . . . . Cpe20g00110 . . . . . . . . . . . . . . . . . . . Lsi02g00167 Csa01g00651 Chy12g01450 Cme12g01890 . . . . . . . . Sed08g2168 . . Cma13g01036 Cma18g00034 Car13g00868 Car18g00028 . . Bhi08g01214 Tan05g2286 Cmetu12g1594 Lac10g0220 . . . Cla04g01106 Cam04g1159 Cec01g1669 Cco01g1715 Clacu04g1186 Cmu04g1166 Cre01g1464 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002047 1 4 1 3 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 1 2 2 2 2 2 2 4 4 2 66