Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01461 ATGGTCGAATTGGATGAGAAAGTTCCCTCCTCATCAGAGGTTGAGGCAATGAACAAAAGGCGCAAGAGGAAGAGACCCAAGAAAAATCTTCCTTCAACTACTACGGAAGAATCGGAACTTCAAAGTTCAATGCAAGGCGAAGAAGAAGGGGAAGAAGATGGTGTAAGCAACGAACCAGAGGAGAGAGTGAAAAAAAACGAGATGAAGAAGAAGAGGAAGACGAAGACGAAAACAAAGGTGAATGACGAGTTGGAAGACGAAGGGAACGATGATGTTAATGATGGCGAGGGTGAGGATGGCGTGGAAGGGGACGGTGAGGAGGGTGAAGAGGATGAGAATAAGAAAAATAAGGTTAAGACTAGTGGGTCAGGAATTATGAGTTCCGTTTCATTTGATTCGCTTGAATTGTCAGAGAAAACTCTACGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATTCAAGCAAGAGCAATTCCGCCTTCTCTAATTGGGAAAGATATTCTTGGAGCTGCAAGAACTGGATCCGGGAAAACTCTTGCTTTTCTTATACCAGCTGTGGAGTTGCTACATCACATTTGCTTTACTCCTCGTAATGGAACTGGCGTTATAGTTATTTGCCCAACACGGGAGCTTGCAATGCAGACACATGAAGTAGCAAAAGAGCTTCTCAAATATCATTCACAGACCCTTGGCCTTGTTACCGGTGGTTCTAGCCGACAAGCTGAGGCTGATCGTATTACAAAGGGGGTCAATCTATTAATAGCAACCCCTGGTCGTCTTCTCGACCATCTTCAGCACACCAAGAATTTTGTGTTCAAAAACTTGAAGTGCCTCATAATCGATGAAGCGGACAGGATATTGGAAACCAATTTTGAGGAGGAAATGAAACAAATTATAAATCTTCTCCCAAAGAATAGGCAGACTGCTTTATTCTCAGCAACCCAAACACAAAAGGTGGAAGATCTTGTTCGCTTGTCATTTCAGTCAACTCCTATTTATATTGATGTGGACGATGGAAGAACAAAGGTCACCAATGAGGGGTTGCAACAAGGTTATTGTGTTTTGCCCAGCTCTAAAAGATTCATTCTTCTATATTCCTTCTTGAAGAAAAATTTATCTAAGAAAGTAATGGTCTTCTTCTCATCTTGTAATTCTGTGAAATTCCATGCGGACCTTCTTAGATATATTAAGGTCGACTGCATGGATATCCATGGAAAGCAAAAGCAGCAGAAGAGAACTTCTACCTTCTTTTCCTTCATCAAGGCCCAGACTGGCATCCTACTATGTACTGATGTTGCTGCACGTGGACTTGATATACCTGCTGTTGATTGGATTGTGCAGTACGATCCTCCAGATGAACCGAAGGAATACATTCACAGAGTTGGTCGAACAGCTCGAGGGGAAGGTAGCAAAGGAAATGCCCTACTTTTCTTGATTCCTGAAGAGATTCAATTTCTTCGCTATCTGAAGGCAGCAAAAGTTCCAGTCAAAGAGTATGAGTTCAGCGACAAGAAACTGGCCAACGTGCAATCTCATCTGGAGAAACTAGTTGGGAGCAATTATTATTTGAACAAGTCCGCCAAGGATGCTTATAGATCCTATATATTAGCTTACAATTCACACTCAATGAAAGATATTTTCAATGTCCACCGCCTTGATCTGCAGGGTATTGCTGCTTCATTCTGCTTTTCCAACCCTCCGAAGGTTAACCTTAACATTGACAGCAGTGCCTCAAAATTCAGGAAGAAAGCGCGTAAAGTAGAAGGCGTCAACAACAGATTCAGTAAGAGCAAGAAAGAGGGAGATGACAGACAATTCGTAAGATACTAA 1836 42.27 MVELDEKVPSSSEVEAMNKRRKRKRPKKNLPSTTTEESELQSSMQGEEEGEEDGVSNEPEERVKKNEMKKKRKTKTKTKVNDELEDEGNDDVNDGEGEDGVEGDGEEGEEDENKKNKVKTSGSGIMSSVSFDSLELSEKTLRAIKDMGFEHMTQIQARAIPPSLIGKDILGAARTGSGKTLAFLIPAVELLHHICFTPRNGTGVIVICPTRELAMQTHEVAKELLKYHSQTLGLVTGGSSRQAEADRITKGVNLLIATPGRLLDHLQHTKNFVFKNLKCLIIDEADRILETNFEEEMKQIINLLPKNRQTALFSATQTQKVEDLVRLSFQSTPIYIDVDDGRTKVTNEGLQQGYCVLPSSKRFILLYSFLKKNLSKKVMVFFSSCNSVKFHADLLRYIKVDCMDIHGKQKQQKRTSTFFSFIKAQTGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGSKGNALLFLIPEEIQFLRYLKAAKVPVKEYEFSDKKLANVQSHLEKLVGSNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQGIAASFCFSNPPKVNLNIDSSASKFRKKARKVEGVNNRFSKSKKEGDDRQFVRY* 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18563296 18567935 - Chy12G220610.1 Chy12g01461 239242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01461 611 MobiDBLite consensus disorder prediction 85 109 - -
Chy12g01461 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 129 157 IPR014014 GO:0003724
Chy12g01461 611 CDD DEADc_DDX18 140 337 IPR044773 GO:0003724|GO:0005524
Chy12g01461 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 335 IPR014001 -
Chy12g01461 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 485 IPR027417 -
Chy12g01461 611 SMART ultradead3 148 353 IPR014001 -
Chy12g01461 611 Pfam DEAD/DEAH box helicase 153 324 IPR011545 GO:0003676|GO:0005524
Chy12g01461 611 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 281 289 IPR000629 -
Chy12g01461 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 336 IPR027417 -
Chy12g01461 611 SMART DUF4217_3 510 573 IPR025313 -
Chy12g01461 611 MobiDBLite consensus disorder prediction 1 124 - -
Chy12g01461 611 Gene3D - 346 593 IPR027417 -
Chy12g01461 611 PANTHER RNA HELICASE 105 580 - -
Chy12g01461 611 CDD SF2_C_DEAD 350 480 - -
Chy12g01461 611 Pfam Helicase conserved C-terminal domain 366 469 IPR001650 -
Chy12g01461 611 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 105 580 - -
Chy12g01461 611 Pfam Domain of unknown function (DUF4217) 511 571 IPR025313 -
Chy12g01461 611 MobiDBLite consensus disorder prediction 1 19 - -
Chy12g01461 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 519 IPR001650 -
Chy12g01461 611 Gene3D - 106 341 IPR027417 -
Chy12g01461 611 SMART helicmild6 389 470 IPR001650 -
Chy12g01461 611 MobiDBLite consensus disorder prediction 42 56 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01461 K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] - csv:101209673 1052.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01479 Chy-Chr5:18505495 Chy12g01461 Chy-Chr12:18563296 1.56E-87 dispersed
Chy06g00800 Chy-Chr6:5617874 Chy12g01461 Chy-Chr12:18563296 1.09E-38 dispersed
Chy10g00365 Chy-Chr10:9025843 Chy12g01461 Chy-Chr12:18563296 5.21E-83 dispersed
Chy12g01383 Chy-Chr12:18013742 Chy12g01461 Chy-Chr12:18563296 0 dispersed
Chy12g01461 Chy-Chr12:18563296 Chy04g00517 Chy-Chr4:5087206 6.26E-64 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g378 . Blo16g00145 . . . Bpe13g00336 Bma06g00006 . Cmo13g01088 . . . . . . Cpe20g00101 . . . . . . . . . . . . . . . . . . . . Csa01g00641 Chy12g01461 Cme12g01901 . . . . . . . . . . . Cma13g01047 . Car13g00880 . . . Bhi08g01037 . . . . . . Cla04g01117 Cam04g1170 Cec01g1681 Cco01g1729 Clacu04g1198 Cmu04g1177 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003223 0 3 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 1 1 1 2 2 1 1 1 51