Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01465 ATGGCGATGAACATCCACATCAGAGCTTCCTCCATTCCTAGACATCACCATCCAACTCCATCACTTCCTTCTCCCTCTCACAGATCCGATTCCAAGTCCCAATTCCGTCCCATCTCCGTTTCTTTACCGGCTTCCACTACTCTCTCTCTCTTAGCTCTTTTTTCATCTCCCTACGAAGCTAAGGCTCTCAACAAAGACCAAATCGTTTCATCTCTTAATGAAGTGGAGAAGACGTTTGATCAGGTTCAAGAAATGGGGTCGAATTTCTTTGATATTGCACAACAGGCTATTGAGTCTGCTAAAACTGTTTTGAAGCCGGGTGTTGATGCGGCGCTGCCGATTGTGAAGCAAGCTGGAGAAGAGGCGTTGAAGGTTGCTTCTCCAACTATTTCTGAGGCTTCAAAGAAAGCCCTTGAAGCACTTCAGGACTCTGGCATTGACACTGAACCTGTTCTTAGTGCTGCCAAGACAGTAGTAGGGGCAGCACAACAAACTGGTAAGGTCATTGAAGGTGCCAAGCCTATAGCGTCGTCGACTGTCGAGACAATCTCCACAACCGATCCTCTTGTAATTGCAGAAATTGCTGGAGTCTTAGCCTTGGCTTACCTGCTCTTTCCTCCAATTTGGTCTGCTATCTCTTTCAACTTTCGTGGCTACAAAGGTGAACTCTCTCCTGCTCAAACACTCGATCTAATTTCATCGAGCAATTACTTTCTAATCGATATTCGATCGGAGAAGGACAAGGATAAGTCTGGCATTCCCCGCCTTCCTTCAAGTGCAAAGAACCAATCGATTGCCATCCCTTTCGAAGAATTACCAAACAAGTTGCGAGGCATTGTCCGAAACGTAAAGAAACTAGAAGCTGAAATTTCAGCCATCAAGATTTCATACCTCAAGAAACTTAACAAAGGCTCCAATATAGTGATCTTGGGCTCGTACTCAGACTCAGCAAAAGCAGTTGCAAAAGCACTAACAAGCCTTGGCTTCAAGAACTCCTGGATTGTAACTGATGGCTTTTTAGGTAGCAAAGGTTGGTTACAGAGTCGATTAGGAACAGATACATACAAGTTCTCATTCGCAGAGATCCTTTCGCCATCCCGAGTCATCTCATCCGGAACCAAACGTTTCGGGACGACTTCATTGACATCTACATCTAGTCAAAAATTGCTTCCTGGTGCTGATTAA 1185 44.98 MAMNIHIRASSIPRHHHPTPSLPSPSHRSDSKSQFRPISVSLPASTTLSLLALFSSPYEAKALNKDQIVSSLNEVEKTFDQVQEMGSNFFDIAQQAIESAKTVLKPGVDAALPIVKQAGEEALKVASPTISEASKKALEALQDSGIDTEPVLSAAKTVVGAAQQTGKVIEGAKPIASSTVETISTTDPLVIAEIAGVLALAYLLFPPIWSAISFNFRGYKGELSPAQTLDLISSSNYFLIDIRSEKDKDKSGIPRLPSSAKNQSIAIPFEELPNKLRGIVRNVKKLEAEISAIKISYLKKLNKGSNIVILGSYSDSAKAVAKALTSLGFKNSWIVTDGFLGSKGWLQSRLGTDTYKFSFAEILSPSRVISSGTKRFGTTSLTSTSSQKLLPGAD* 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18606228 18608054 + Chy12G220650.1 Chy12g01465 239246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01465 394 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 7 392 IPR044690 GO:0009704|GO:0071277|GO:0090333
Chy12g01465 394 ProSiteProfiles Rhodanese domain profile. 233 354 IPR001763 -
Chy12g01465 394 PANTHER CALCIUM SENSING RECEPTOR, CHLOROPLASTIC 7 392 - -
Chy12g01465 394 MobiDBLite consensus disorder prediction 9 35 - -
Chy12g01465 394 CDD RHOD 227 341 - -
Chy12g01465 394 Gene3D - 220 359 IPR036873 -
Chy12g01465 394 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 222 341 IPR036873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01465 - - - csv:101209180 716.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01663 Chy-Chr3:18404254 Chy12g01465 Chy-Chr12:18606228 2.26E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g389 . . . . . . . . Cmo13g01091 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00153 Csa01g00637 Chy12g01465 Cme12g01908 . . . Bda14g00903 . Bpe15g00555 . . Sed01g2262 . . Cma13g01050 . Car13g00883 . Cpe09g01146 . Bhi08g01041 Tan05g2307 Cmetu03g1392 Lac10g0201 Hepe07g2429 . . Cla04g01122 Cam04g1175 Cec01g1687 Cco01g1735 Clacu04g1203 Cmu04g1182 Cre01g1480 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g01104 . 83 400 Sulfurtransferasese/Rhodanese AT1G79230 75.5 2.1e-146 515.4
Chy06g01104 . 83 347 Sulfurtransferasese/Rhodanese AT1G16460 73.6 3.3e-113 404.8
Chy12g01465 . 36 312 Sulfurtransferasese/Rhodanese AT5G23060 64.8 1.2e-85 313.5
Chy06g00108 . 1 443 Sulfurtransferasese/Rhodanese AT4G01050 51.9 2.2e-118 422.9
Chy12g00613 . 6 610 Sulfurtransferasese/Rhodanese AT1G09280 63.6 3.1e-225 778.1
Chy10g00299 . 22 379 Sulfurtransferasese/Rhodanese AT2G40760 74.1 2.1e-155 545.8
Chy04g01560 . 84 412 Sulfurtransferasese/Rhodanese AT1G17850 66.6 3.5e-136 481.9
Chy08g00021 . 41 247 Sulfurtransferasese/Rhodanese AT2G42220 74.9 1.5e-85 312.8
Chy04g02254 . 13 217 Sulfurtransferasese/Rhodanese AT3G08920 58.0 1.3e-64 243.0
Chy02g02624 . 1 296 Sulfurtransferasese/Rhodanese AT4G24750 68.4 6.1e-113 404.1
Chy05g00171 . 67 293 Sulfurtransferasese/Rhodanese AT5G19370 66.7 5.5e-85 311.2
Chy06g01835 . 731 1085 Sulfurtransferasese/Rhodanese AT5G55130 72.1 2.2e-149 525.4
Chy06g01177 . 505 685 Sulfurtransferasese/Rhodanese AT4G27700 80.1 2.0e-79 292.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010320 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32