Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01471 ATGGCGGATGATTCAATTAACTCCTTCGCTTCGTCCTCAGAAGATCGATTAAAAGCCCTAATTTCTTGTCCTTCCGCGAGGGCTAAATCCGGTACCGAAGAGGAATTTCTTGAAGGTGGATTTGAAGAAAATCACCTGCTGATTGACGATAATCCTTCTTCTATCTGTGTAATTTGCTTTTCGGAAGATGGAAAAGCGGAGAGAGGCAAGCTTGATTCCTGTGATCATTATTTTTGCTTCGTCTGCATTATGGAGTGGGCGAGGATTGAATCTAGATGCCCTGCTTGTAAGGGCAGGTTCACTGTTGTTCATAGAATTGGGAAGGATCCTTGTCGTCTCCGTGAACGAATTGTTAATATTCCTATGCGGAATCAGTCTGCTTCTGGAAATTCTAGAATTGGGGATCCATATGCAGAGACGTGTTGTACTGTGTGCAAGGGAATGGAAGATGAAGGTCTCATGTTACTCTGTGATCTCTGTGATTCAGCTGCTCATACTTTTTGTGTCGGCCTTGGTGCTAATGTACCCGAAGGTGATTGGTATTGCCATGACTGCACCATCTCCAGAGCTCAACATACTGATACTGAATTGGATACTAGTTTCTTCAATCAAAATCAAACAACTACAGTTGAACCACGCATTGCTATTTCTGATATAGTAAAAGAATCAAGTGCTCAAACAGTTAGCATAACTCGTAGAGGAGCTCTTTTACATTCAAATCGTGAGCCACCTTCTATTGTCCCCAGTTCGAGAAGCAGTGTGGCCCAGAAATCATTGCCTAGTCGTGGTGGTAAAGCTGCGGGAACAAGTGCAAGAACAAGTGCAAGAACAAGTGCAAGAACATTACATCGATGTCGCAACATCCATAGCTATATAAGGGCATTACGTGATAATTGGGATGCTGTACGAAAGGGTTCGCTGAAGTTTCCTGCTACCAGCTCATCCACATATTGTGGCAACAGTTCCAAACGAGATACTGGTGGTGCTGAACTAATAAACAAGCAAACAAATCAACCTCATGCCATTAGCTTGCAGGCAACCGCATTACCTGAGTCTAATGGAAACTCTTATGATGTCGAGAAGGCATGGCGAATGATGGAAATTGCAAAGGAAAAGGCTATACGTGAGGGAGATCAAACCTTGAGACATCCTGTTAGTAGACAAATAACCACAAAAACAAAAGATTCTCACACAGCTAAAGGTCAACAGTACAAAATCAAGAAGCCGGATGAGCCAGCCAAGCATAAGAAGGAAATGGGAAAACAAAGATTGCTCGAGTTGGATAAGCAATTGTGTCGTCCTGTAGCAAGTAAGAAGAATAAAGCTTCTGATGAGTTTTTTCCTACCCATTCATCCAGTAATGGAGAATTTCCCTTGGGTAAAATGGTCCAGACTTGTGGAGGCGATCTCCACTGTGAAAATAGAAGAAAGCCATCAAACAAAATAGTGGATGAAGTTTCATCATCCTTCACAATGACACAAGCCTCGGATAAACACCATCCTGCTCGTGAGGCTGGCAATGATCACGATGGCAAAAGTGAGATACGAACACTGGTCAAAATCAATCTAAAACTCCTAAGCCAAGGCAAAAATTTGGGATACGAAAGGTACAAAGAAGTGACAAGGCTAGCAACACACACAATCATGGCAAGATGTGGTTTAGAACCCCCACCAAAAGCAACCAAACAATACGTATCGTCCTCGGTTTGCAAACACACAGAAGAAGAAATCCGGAAGCTTCACAGGTCGACTCTAATGCCGGATTCTTGCAGGAAATGCTTCATGGGGTTTGTGAAAGATGTTGTTAATGCCATTATGTTAGAAAAACTAACGGTGGGTTCCTCTTCTTAG 1851 42.79 MADDSINSFASSSEDRLKALISCPSARAKSGTEEEFLEGGFEENHLLIDDNPSSICVICFSEDGKAERGKLDSCDHYFCFVCIMEWARIESRCPACKGRFTVVHRIGKDPCRLRERIVNIPMRNQSASGNSRIGDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTFCVGLGANVPEGDWYCHDCTISRAQHTDTELDTSFFNQNQTTTVEPRIAISDIVKESSAQTVSITRRGALLHSNREPPSIVPSSRSSVAQKSLPSRGGKAAGTSARTSARTSARTLHRCRNIHSYIRALRDNWDAVRKGSLKFPATSSSTYCGNSSKRDTGGAELINKQTNQPHAISLQATALPESNGNSYDVEKAWRMMEIAKEKAIREGDQTLRHPVSRQITTKTKDSHTAKGQQYKIKKPDEPAKHKKEMGKQRLLELDKQLCRPVASKKNKASDEFFPTHSSSNGEFPLGKMVQTCGGDLHCENRRKPSNKIVDEVSSSFTMTQASDKHHPAREAGNDHDGKSEIRTLVKINLKLLSQGKNLGYERYKEVTRLATHTIMARCGLEPPPKATKQYVSSSVCKHTEEEIRKLHRSTLMPDSCRKCFMGFVKDVVNAIMLEKLTVGSSS* 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18654870 18657573 + Chy12G220710.1 Chy12g01471 239252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01471 616 Pfam Ring finger domain 56 97 IPR001841 -
Chy12g01471 616 ProSiteProfiles Zinc finger PHD-type profile. 139 188 IPR019787 -
Chy12g01471 616 SMART ring_2 142 185 IPR001841 -
Chy12g01471 616 SMART ring_2 56 96 IPR001841 -
Chy12g01471 616 MobiDBLite consensus disorder prediction 232 279 - -
Chy12g01471 616 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 212 IPR013083 -
Chy12g01471 616 SMART PHD_3 141 186 IPR001965 -
Chy12g01471 616 SUPERFAMILY FYVE/PHD zinc finger 129 188 IPR011011 -
Chy12g01471 616 MobiDBLite consensus disorder prediction 243 259 - -
Chy12g01471 616 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 107 IPR013083 -
Chy12g01471 616 SUPERFAMILY RING/U-box 51 103 - -
Chy12g01471 616 ProSitePatterns Zinc finger RING-type signature. 74 83 IPR017907 -
Chy12g01471 616 Pfam PHD-finger 142 186 IPR019787 -
Chy12g01471 616 ProSiteProfiles Zinc finger RING-type profile. 56 97 IPR001841 -
Chy12g01471 616 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 8 611 - -
Chy12g01471 616 PANTHER F18C1.6 PROTEIN 8 611 - -
Chy12g01471 616 MobiDBLite consensus disorder prediction 390 415 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01471 - - - csv:101208450 1145.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g01060 Chy-Chr8:17705581 Chy12g01471 Chy-Chr12:18654870 2.80E-39 dispersed
Chy09g01310 Chy-Chr9:15032006 Chy12g01471 Chy-Chr12:18654870 6.05E-12 dispersed
Chy12g01471 Chy-Chr12:18654870 Chy02g01487 Chy-Chr2:12223528 9.18E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g415 . Blo16g00156 . . . Bpe13g00328 Bma06g00016 . Cmo13g01096 . . . . . . Cpe20g00095 . . . . . . . . . . . . . . . Cone2ag0788 . . . Lsi02g00146 Csa01g00629 Chy12g01471 Cme12g01913 . . . . . . . . Sed08g2145 . . Cma13g01053 . Car13g00887 . . . Bhi08g01047 Tan05g2316 Cmetu12g1391 Lac10g0192 Hepe07g2435 . . Cla04g01131 Cam04g1183 Cec01g1696 Cco01g1742 Clacu04g1211 Cmu04g1190 Cre01g1488 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008899 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18900 PF00628 PHD 8.30E-09 CL0390 Chy TR