Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01477 ATGGCGGCGACAAAATCCCAGAAATTTTCGGCGGATTTTGTGATGGGTGGAGTTGCTGCGATTGTGGCCAAAACTGCAGCCGCACCCATTGAAAGGGTAAAGCTTTTGTTGCAGAATCAGGGGGAGATGATAAAGAGAGGCCATCTTAAGAACCCATATCTTGGAATTCATCACTGTTTCAGAACTGTTCTCAAAGAAGAAGGCTTTTTGTCTCTATGGAGGGGAAATCAGGTTAATGTTATTCGATATTTCCCTACTCAGGCTTTCAACTTTGCATTCAAAGGTTACTTCAAAACGAAATTTGGCCGCTCGAAAGAGAAGGACGGATACATCAAGTGGTTTGCTGGAAATGTGGCATCAGGAAGTGCTGCTGGAGCAACTACATCTTTGTTTCTATATCATTTGGATTACGCACGCACTCGGCTTGGCACCGATGCAAAGGGCGGTGGCGGTAACAGTCAGCACCAGTTCAAAGGGATCTTTGATGTGTACAGAAAAACATTGTCAAGTGATGGAATTGTTGGTCTCTACCGAGGATTTAGTGTTTCAATCATTGGAATTACTCTGTACAGGGGCATGTATTTTGGGATTTACGACACTTTGAAACCTCTTGTTCTGGTTGGACAGTTTGAGGGGAACTTTTTAGCTAGTTTCTTACTGGGGTGGAGTATTACAACCTTTTCTGGGGTATGTGCTTATCCTTTCGACACACTGCGACGAAGAATGATGCTTACATCTGGACAAACCATGAAGTATCGTAGTGGTTTGCATGCATTTTCTGAGATCATTCGCCATGAGGGCATTGCTGCTCTTTTTCGAGGAGTCACAGCCAATATGCTTGTTGGTGTTGCTGGGGCTGGCGTTCTTGCAGGTTATGATCAATTGCACCGAATCGCATGTAGAAATGGTTATTCCTTTGGAGGGCAACATCAAATAGCTTCAAAATGA 948 43.99 MAATKSQKFSADFVMGGVAAIVAKTAAAPIERVKLLLQNQGEMIKRGHLKNPYLGIHHCFRTVLKEEGFLSLWRGNQVNVIRYFPTQAFNFAFKGYFKTKFGRSKEKDGYIKWFAGNVASGSAAGATTSLFLYHLDYARTRLGTDAKGGGGNSQHQFKGIFDVYRKTLSSDGIVGLYRGFSVSIIGITLYRGMYFGIYDTLKPLVLVGQFEGNFLASFLLGWSITTFSGVCAYPFDTLRRRMMLTSGQTMKYRSGLHAFSEIIRHEGIAALFRGVTANMLVGVAGAGVLAGYDQLHRIACRNGYSFGGQHQIASK* 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18680921 18682894 + Chy12G220770.1 Chy12g01477 239258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01477 315 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 4 309 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Chy12g01477 315 SUPERFAMILY Mitochondrial carrier 7 295 IPR023395 -
Chy12g01477 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 204 IPR018108 -
Chy12g01477 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 7 100 IPR018108 -
Chy12g01477 315 PANTHER ADP,ATP CARRIER PROTEIN ER-ANT1 4 309 - -
Chy12g01477 315 Gene3D Mitochondrial carrier domain 2 304 IPR023395 -
Chy12g01477 315 PRINTS Adenine nucleotide translocator signature 217 233 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Chy12g01477 315 PRINTS Adenine nucleotide translocator signature 9 21 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Chy12g01477 315 PRINTS Adenine nucleotide translocator signature 112 125 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Chy12g01477 315 PRINTS Adenine nucleotide translocator signature 86 98 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Chy12g01477 315 PRINTS Adenine nucleotide translocator signature 53 74 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Chy12g01477 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 212 298 IPR018108 -
Chy12g01477 315 Pfam Mitochondrial carrier protein 113 205 IPR018108 -
Chy12g01477 315 Pfam Mitochondrial carrier protein 7 103 IPR018108 -
Chy12g01477 315 Pfam Mitochondrial carrier protein 213 298 IPR018108 -
Chy12g01477 315 PRINTS Mitochondrial carrier protein signature 12 25 IPR002067 GO:0055085
Chy12g01477 315 PRINTS Mitochondrial carrier protein signature 127 145 IPR002067 GO:0055085
Chy12g01477 315 PRINTS Mitochondrial carrier protein signature 25 39 IPR002067 GO:0055085
Chy12g01477 315 PRINTS Mitochondrial carrier protein signature 221 243 IPR002067 GO:0055085
Chy12g01477 315 PRINTS Mitochondrial carrier protein signature 75 95 IPR002067 GO:0055085
Chy12g01477 315 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01554 Chy-Chr3:17708965 Chy12g01477 Chy-Chr12:18680921 1.55E-112 dispersed
Chy03g01651 Chy-Chr3:18338456 Chy12g01477 Chy-Chr12:18680921 6.27E-55 dispersed
Chy12g01477 Chy-Chr12:18680921 Chy06g00134 Chy-Chr6:871321 6.16E-13 dispersed
Chy12g01477 Chy-Chr12:18680921 Chy08g00635 Chy-Chr8:14257997 3.96E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01477 K05863 - csv:101207715 597.43