Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01479 ATGGGGAGAGGGAGAGTGCAATTGAAGAGAATAGAGAACAAAATTAATAGACAAGTGACTTTCTCTAAAAGAAGGTCAGGTTTGTTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTTTTCTCCACCAAGGGGAAGCTCTTTGAATACTCAACTGATTCTTGTGAAATGAATATGAGTCAGAATTTGAATTTTCATTTCAGCATGGAGAAAATTCTTGAGCGTTATGAAAGGTATTCATATGCAGAGAGGAGACTTGTTGCAAACGATAGCCAATCAAATGGAAATTGGACACTTGAACATGCAAAGCTTAAAGCCAGAATAGAGGTTTTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTCGACTCATTGAGTCTAAAAGAGCTCCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTACAGAGCTACAGAAAAAGGGCAAAGTACTACAAGAGCATAATAACATCTTAGGCAAAAAGATAAAGGAGAAGGAGAAATCACGAGCTCACAATCCACAAATGGAGCAGCAGCAGCAGAATAGTAATGTCATTGAATCTTCTCCACTTCTTCTACCTCAGCCATTTCAATCTCTTAGCATGAGTTGTCCTTATCCAACCCACGGCCCTGAAGAGAACGAGTCCACTGCCAATCACGAAAGATCCGATACCCTCCTTCCGCCGTGGATGCTCCGCCACCACCTTGGTGTCTAA 783 40.74 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCEMNMSQNLNFHFSMEKILERYERYSYAERRLVANDSQSNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESITELQKKGKVLQEHNNILGKKIKEKEKSRAHNPQMEQQQQNSNVIESSPLLLPQPFQSLSMSCPYPTHGPEENESTANHERSDTLLPPWMLRHHLGV* 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18691801 18696422 - Chy12G220790.1 Chy12g01479 239260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01479 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy12g01479 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Chy12g01479 260 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 231 - -
Chy12g01479 260 CDD MADS_MEF2_like 2 89 IPR033896 GO:0000977|GO:0045944
Chy12g01479 260 Coils Coil 135 158 - -
Chy12g01479 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Chy12g01479 260 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
Chy12g01479 260 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Chy12g01479 260 MobiDBLite consensus disorder prediction 219 248 - -
Chy12g01479 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy12g01479 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy12g01479 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy12g01479 260 MobiDBLite consensus disorder prediction 219 235 - -
Chy12g01479 260 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Chy12g01479 260 ProSiteProfiles K-box domain profile. 101 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy12g01479 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy12g01479 260 Pfam K-box region 97 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01479 K09264 K09264; MADS-box transcription factor, plant - csv:101207225 485.337
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00031 Chy-Chr2:215272 Chy12g01479 Chy-Chr12:18691801 1.48E-38 dispersed
Chy03g00725 Chy-Chr3:9720503 Chy12g01479 Chy-Chr12:18691801 2.11E-28 dispersed
Chy12g01479 Chy-Chr12:18691801 Chy11g01998 Chy-Chr11:25858106 8.91E-41 dispersed
Chy12g01479 Chy-Chr12:18691801 Chy12g01480 Chy-Chr12:18701175 1.14E-51 tandem
Chy12g01479 Chy-Chr12:18691801 Chy03g00724 Chy-Chr3:9696319 1.31E-21 wgd
Chy12g01479 Chy-Chr12:18691801 Chy07g00765 Chy-Chr7:8527001 2.07E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g437 . . . . . . . . . . . . . . . Cpe20g00089 . . . . . . . . . . . . . . . . Cone16ag0224 . . Lsi02g00138 Csa01g00622 Chy12g01479 Cme12g01920 . . . Bda14g00891 . Bpe15g00567 Bma03g00867 . . . . . . . Car18g00017 Cpe09g01155 . Bhi08g01059 . . Lac10g0183 Hepe07g2444 . . Cla04g01139 Cam04g1192 Cec01g1704 Cco01g1749 Clacu04g1218 Cmu04g1197 Cre01g1496 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00197 CCT 40 263 MADS-box Gene Family AT3G58780 65.0 2.9e-74 275.4
Chy09g00018 . 1 224 MADS-box Gene Family AT3G58780 61.5 3.2e-73 271.9
Chy11g00996 . 1 171 MADS-box Gene Family AT3G58780 80.7 2.3e-71 265.8
Chy12g00045 CCT 20 179 MADS-box Gene Family AT3G58780 75.6 8.6e-63 237.3
Chy12g01479 . 1 259 MADS-box Gene Family AT1G26310 53.8 5.4e-65 244.6
Chy07g00765 . 1 187 MADS-box Gene Family AT1G26310 64.6 5.3e-60 228.0
Chy12g01480 . 82 255 MADS-box Gene Family AT1G26310 54.7 1.9e-41 166.4
Chy09g00018 . 1 225 MADS-box Gene Family AT4G09960 74.9 1.7e-86 315.8
Chy02g00197 CCT 42 217 MADS-box Gene Family AT4G09960 73.3 1.7e-65 246.1
Chy11g00996 . 1 171 MADS-box Gene Family AT4G09960 70.2 1.3e-60 229.9
Chy12g00045 CCT 25 179 MADS-box Gene Family AT4G09960 74.8 6.4e-57 217.6
Chy09g00023 . 1 204 MADS-box Gene Family AT1G71692 57.1 8.5e-56 213.8
Chy11g01793 . 1 170 MADS-box Gene Family AT3G61120 55.8 1.8e-41 166.4
Chy09g01173 . 1 199 MADS-box Gene Family AT4G11880 56.9 3.9e-51 198.4
Chy09g00944 CCT,ECH 1 214 MADS-box Gene Family AT4G11880 53.5 2.1e-44 176.0
Chy11g01998 . 1 174 MADS-box Gene Family AT4G11880 57.7 1.5e-42 169.9
Chy04g01233 . 1 244 MADS-box Gene Family AT5G13790 51.8 1.1e-52 203.8
Chy02g00774 . 1 160 MADS-box Gene Family AT2G22630 66.3 2.1e-52 202.6
Chy08g00183 . 18 191 MADS-box Gene Family AT3G57390 52.8 3.4e-42 168.7
Chy09g01173 . 1 199 MADS-box Gene Family AT4G22950 57.9 8.3e-54 207.2
Chy11g01998 . 1 174 MADS-box Gene Family AT4G22950 59.1 6.3e-46 181.0
Chy09g00944 CCT,ECH 1 214 MADS-box Gene Family AT4G22950 51.4 2.9e-43 172.2
Chy09g00018 . 1 164 MADS-box Gene Family AT4G22950 51.8 2.4e-37 152.5
Chy11g01793 . 1 218 MADS-box Gene Family AT5G15800 67.4 1.6e-72 269.6
Chy12g01480 . 82 338 MADS-box Gene Family AT5G15800 53.0 1.6e-64 243.0
Chy07g00765 . 1 175 MADS-box Gene Family AT5G15800 55.4 4.6e-43 171.8
Chy06g00896 . 1 170 MADS-box Gene Family AT5G15800 54.3 1.1e-39 160.6
Chy11g01998 . 1 162 MADS-box Gene Family AT2G45660 69.1 3.3e-52 201.4
Chy09g00944 CCT,ECH 1 158 MADS-box Gene Family AT2G45660 65.2 7.8e-46 180.3
Chy09g01173 . 1 151 MADS-box Gene Family AT2G45660 62.9 3.9e-45 177.9
Chy06g00898 CCT,ECH 1 153 MADS-box Gene Family AT2G45660 57.5 4.1e-39 157.9
Chy02g00774 . 1 155 MADS-box Gene Family AT4G37940 67.7 6.8e-53 204.1
Chy02g00756 . 1 223 MADS-box Gene Family AT2G22540 63.7 2.9e-68 255.4
Chy03g01305 . 1 227 MADS-box Gene Family AT2G22540 52.9 3.7e-55 211.8
Chy02g00756 . 1 223 MADS-box Gene Family AT4G24540 57.6 2.5e-58 222.2
Chy03g01305 . 1 227 MADS-box Gene Family AT4G24540 54.6 3.0e-56 215.3
Chy11g01793 . 1 176 MADS-box Gene Family AT2G03710 63.8 2.4e-54 208.8
Chy12g01480 . 82 253 MADS-box Gene Family AT2G03710 61.8 4.3e-51 198.0
Chy07g00765 . 1 173 MADS-box Gene Family AT2G03710 52.6 1.7e-39 159.5
Chy11g01793 . 1 172 MADS-box Gene Family AT3G02310 77.9 1.2e-67 253.1
Chy12g01480 . 82 266 MADS-box Gene Family AT3G02310 63.2 2.5e-57 218.8
Chy07g00765 . 1 181 MADS-box Gene Family AT3G02310 54.1 5.1e-42 167.9
Chy06g00896 . 1 168 MADS-box Gene Family AT3G02310 54.4 4.0e-39 158.3
Chy09g00944 CCT,ECH 1 145 MADS-box Gene Family AT5G62165 68.3 9.5e-49 189.9
Chy06g00898 CCT,ECH 1 145 MADS-box Gene Family AT5G62165 58.6 8.7e-42 166.8
Chy11g01998 . 1 154 MADS-box Gene Family AT5G62165 56.5 1.9e-41 165.6
Chy09g01173 . 1 139 MADS-box Gene Family AT5G62165 58.5 7.6e-38 153.7
Chy02g00774 . 1 142 MADS-box Gene Family AT2G14210 69.2 4.7e-47 184.9
Chy09g00018 . 1 224 MADS-box Gene Family AT2G42830 60.3 3.2e-70 261.9
Chy02g00197 CCT 40 263 MADS-box Gene Family AT2G42830 63.3 1.3e-68 256.5
Chy11g00996 . 1 171 MADS-box Gene Family AT2G42830 76.3 1.6e-66 249.6
Chy12g00045 CCT 20 180 MADS-box Gene Family AT2G42830 75.8 1.7e-63 239.6
Chy11g01793 . 1 220 MADS-box Gene Family AT2G45650 53.1 1.9e-49 193.0
Chy06g00896 . 1 172 MADS-box Gene Family AT2G45650 56.9 6.6e-47 184.5
Chy09g00018 . 1 164 MADS-box Gene Family AT2G45650 53.0 4.6e-40 161.8
Chy07g00765 . 1 169 MADS-box Gene Family AT2G45650 52.1 6.6e-39 157.9
Chy12g00045 CCT 25 179 MADS-box Gene Family AT2G45650 51.6 1.1e-36 150.6
Chy02g00161 . 49 165 MADS-box Gene Family AT1G29960 56.4 1.6e-38 155.6
Chy12g01479 . 76 233 MADS-box Gene Family AT1G69120 55.0 3.0e-39 158.7
Chy09g00944 CCT,ECH 1 144 MADS-box Gene Family AT5G51870 56.7 2.3e-39 159.1
Chy06g00898 CCT,ECH 1 139 MADS-box Gene Family AT5G51870 54.0 6.3e-37 151.0
Chy11g01998 . 1 171 MADS-box Gene Family AT5G51860 50.3 1.3e-37 153.3
Chy07g00765 . 1 241 MADS-box Gene Family AT3G30260 50.6 4.4e-51 198.4
Chy12g01479 . 76 255 MADS-box Gene Family AT5G60910 53.9 2.7e-42 168.7
Chy11g01793 . 1 220 MADS-box Gene Family AT1G24260 75.6 1.6e-82 302.8
Chy07g00765 . 1 161 MADS-box Gene Family AT1G24260 54.6 9.6e-40 160.6
Chy12g01479 . 1 170 MADS-box Gene Family AT1G24260 50.8 1.2e-37 153.7
Chy06g00896 . 1 157 MADS-box Gene Family AT1G24260 53.0 4.5e-37 151.8
Chy04g00443 . 1 245 MADS-box Gene Family AT3G54340 59.6 6.0e-71 264.2
Chy04g00443 . 1 245 MADS-box Gene Family AT3G54340 59.6 6.0e-71 264.2
Chy02g00197 CCT 40 263 MADS-box Gene Family AT3G58780 65.0 2.9e-74 275.4
Chy09g00018 . 1 224 MADS-box Gene Family AT3G58780 61.5 3.2e-73 271.9
Chy11g00996 . 1 171 MADS-box Gene Family AT3G58780 80.7 2.3e-71 265.8
Chy12g00045 CCT 20 179 MADS-box Gene Family AT3G58780 75.6 8.6e-63 237.3
Chy11g01793 . 1 218 MADS-box Gene Family AT5G15800 67.4 1.6e-72 269.6
Chy12g01480 . 82 338 MADS-box Gene Family AT5G15800 53.0 1.6e-64 243.0
Chy07g00765 . 1 175 MADS-box Gene Family AT5G15800 55.4 4.6e-43 171.8
Chy06g00896 . 1 170 MADS-box Gene Family AT5G15800 54.3 1.1e-39 160.6
Chy11g01793 . 1 176 MADS-box Gene Family AT2G03710 63.8 2.4e-54 208.8
Chy12g01480 . 82 253 MADS-box Gene Family AT2G03710 61.8 4.3e-51 198.0
Chy07g00765 . 1 173 MADS-box Gene Family AT2G03710 52.6 1.7e-39 159.5
Chy11g01793 . 1 172 MADS-box Gene Family AT3G02310 77.9 1.2e-67 253.1
Chy12g01480 . 82 266 MADS-box Gene Family AT3G02310 63.2 2.5e-57 218.8
Chy07g00765 . 1 181 MADS-box Gene Family AT3G02310 54.1 5.1e-42 167.9
Chy06g00896 . 1 168 MADS-box Gene Family AT3G02310 54.4 4.0e-39 158.3
Chy09g00018 . 1 224 MADS-box Gene Family AT2G42830 60.3 3.2e-70 261.9
Chy02g00197 CCT 40 263 MADS-box Gene Family AT2G42830 63.3 1.3e-68 256.5
Chy11g00996 . 1 171 MADS-box Gene Family AT2G42830 76.3 1.6e-66 249.6
Chy12g00045 CCT 20 180 MADS-box Gene Family AT2G42830 75.8 1.7e-63 239.6
Chy11g01793 . 1 220 MADS-box Gene Family AT2G45650 53.1 1.9e-49 193.0
Chy06g00896 . 1 172 MADS-box Gene Family AT2G45650 56.9 6.6e-47 184.5
Chy09g00018 . 1 164 MADS-box Gene Family AT2G45650 53.0 4.6e-40 161.8
Chy07g00765 . 1 169 MADS-box Gene Family AT2G45650 52.1 6.6e-39 157.9
Chy12g00045 CCT 25 179 MADS-box Gene Family AT2G45650 51.6 1.1e-36 150.6
Chy12g01479 . 76 233 MADS-box Gene Family AT1G69120 55.0 3.0e-39 158.7
Chy12g01479 . 76 255 MADS-box Gene Family AT5G60910 53.9 2.7e-42 168.7
Chy11g01793 . 1 220 MADS-box Gene Family AT1G24260 75.6 1.6e-82 302.8
Chy07g00765 . 1 161 MADS-box Gene Family AT1G24260 54.6 9.6e-40 160.6
Chy12g01479 . 1 170 MADS-box Gene Family AT1G24260 50.8 1.2e-37 153.7
Chy06g00896 . 1 157 MADS-box Gene Family AT1G24260 53.0 4.5e-37 151.8
Chy12g01479 . 1 259 MADS-box Gene Family AT1G26310 53.8 5.4e-65 244.6
Chy07g00765 . 1 187 MADS-box Gene Family AT1G26310 64.6 5.3e-60 228.0
Chy12g01480 . 82 255 MADS-box Gene Family AT1G26310 54.7 1.9e-41 166.4
Chy09g00018 . 1 225 MADS-box Gene Family AT4G09960 74.9 1.7e-86 315.8
Chy02g00197 CCT 42 217 MADS-box Gene Family AT4G09960 73.3 1.7e-65 246.1
Chy11g00996 . 1 171 MADS-box Gene Family AT4G09960 70.2 1.3e-60 229.9
Chy12g00045 CCT 25 179 MADS-box Gene Family AT4G09960 74.8 6.4e-57 217.6
Chy09g00023 . 1 204 MADS-box Gene Family AT1G71692 57.1 8.5e-56 213.8
Chy11g01793 . 1 170 MADS-box Gene Family AT3G61120 55.8 1.8e-41 166.4
Chy09g01173 . 1 199 MADS-box Gene Family AT4G11880 56.9 3.9e-51 198.4
Chy09g00944 CCT,ECH 1 214 MADS-box Gene Family AT4G11880 53.5 2.1e-44 176.0
Chy11g01998 . 1 174 MADS-box Gene Family AT4G11880 57.7 1.5e-42 169.9
Chy04g01233 . 1 244 MADS-box Gene Family AT5G13790 51.8 1.1e-52 203.8
Chy02g00774 . 1 160 MADS-box Gene Family AT2G22630 66.3 2.1e-52 202.6
Chy08g00183 . 18 191 MADS-box Gene Family AT3G57390 52.8 3.4e-42 168.7
Chy09g01173 . 1 199 MADS-box Gene Family AT4G22950 57.9 8.3e-54 207.2
Chy11g01998 . 1 174 MADS-box Gene Family AT4G22950 59.1 6.3e-46 181.0
Chy09g00944 CCT,ECH 1 214 MADS-box Gene Family AT4G22950 51.4 2.9e-43 172.2
Chy09g00018 . 1 164 MADS-box Gene Family AT4G22950 51.8 2.4e-37 152.5
Chy11g01998 . 1 162 MADS-box Gene Family AT2G45660 69.1 3.3e-52 201.4
Chy09g00944 CCT,ECH 1 158 MADS-box Gene Family AT2G45660 65.2 7.8e-46 180.3
Chy09g01173 . 1 151 MADS-box Gene Family AT2G45660 62.9 3.9e-45 177.9
Chy06g00898 CCT,ECH 1 153 MADS-box Gene Family AT2G45660 57.5 4.1e-39 157.9
Chy02g00774 . 1 155 MADS-box Gene Family AT4G37940 67.7 6.8e-53 204.1
Chy02g00756 . 1 223 MADS-box Gene Family AT2G22540 63.7 2.9e-68 255.4
Chy03g01305 . 1 227 MADS-box Gene Family AT2G22540 52.9 3.7e-55 211.8
Chy02g00756 . 1 223 MADS-box Gene Family AT4G24540 57.6 2.5e-58 222.2
Chy03g01305 . 1 227 MADS-box Gene Family AT4G24540 54.6 3.0e-56 215.3
Chy09g00944 CCT,ECH 1 145 MADS-box Gene Family AT5G62165 68.3 9.5e-49 189.9
Chy06g00898 CCT,ECH 1 145 MADS-box Gene Family AT5G62165 58.6 8.7e-42 166.8
Chy11g01998 . 1 154 MADS-box Gene Family AT5G62165 56.5 1.9e-41 165.6
Chy09g01173 . 1 139 MADS-box Gene Family AT5G62165 58.5 7.6e-38 153.7
Chy02g00774 . 1 142 MADS-box Gene Family AT2G14210 69.2 4.7e-47 184.9
Chy02g00161 . 49 165 MADS-box Gene Family AT1G29960 56.4 1.6e-38 155.6
Chy09g00944 CCT,ECH 1 144 MADS-box Gene Family AT5G51870 56.7 2.3e-39 159.1
Chy06g00898 CCT,ECH 1 139 MADS-box Gene Family AT5G51870 54.0 6.3e-37 151.0
Chy11g01998 . 1 171 MADS-box Gene Family AT5G51860 50.3 1.3e-37 153.3
Chy07g00765 . 1 241 MADS-box Gene Family AT3G30260 50.6 4.4e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000605 4 3 4 7 5 3 4 3 3 2 2 3 4 3 3 5 3 1 5 3 2 3 3 3 3 2 3 6 4 4 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18903 PF01486 K-box 2.80E-29 No_clan Chy TF