Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01479 ATGGGGAGAGGGAGAGTGCAATTGAAGAGAATAGAGAACAAAATTAATAGACAAGTGACTTTCTCTAAAAGAAGGTCAGGTTTGTTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTTTTCTCCACCAAGGGGAAGCTCTTTGAATACTCAACTGATTCTTGTGAAATGAATATGAGTCAGAATTTGAATTTTCATTTCAGCATGGAGAAAATTCTTGAGCGTTATGAAAGGTATTCATATGCAGAGAGGAGACTTGTTGCAAACGATAGCCAATCAAATGGAAATTGGACACTTGAACATGCAAAGCTTAAAGCCAGAATAGAGGTTTTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTCGACTCATTGAGTCTAAAAGAGCTCCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTACAGAGCTACAGAAAAAGGGCAAAGTACTACAAGAGCATAATAACATCTTAGGCAAAAAGATAAAGGAGAAGGAGAAATCACGAGCTCACAATCCACAAATGGAGCAGCAGCAGCAGAATAGTAATGTCATTGAATCTTCTCCACTTCTTCTACCTCAGCCATTTCAATCTCTTAGCATGAGTTGTCCTTATCCAACCCACGGCCCTGAAGAGAACGAGTCCACTGCCAATCACGAAAGATCCGATACCCTCCTTCCGCCGTGGATGCTCCGCCACCACCTTGGTGTCTAA 783 40.74 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCEMNMSQNLNFHFSMEKILERYERYSYAERRLVANDSQSNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESITELQKKGKVLQEHNNILGKKIKEKEKSRAHNPQMEQQQQNSNVIESSPLLLPQPFQSLSMSCPYPTHGPEENESTANHERSDTLLPPWMLRHHLGV* 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18691801 18696422 - Chy12G220790.1 Chy12g01479 239260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01479 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy12g01479 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Chy12g01479 260 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 231 - -
Chy12g01479 260 CDD MADS_MEF2_like 2 89 IPR033896 GO:0000977|GO:0045944
Chy12g01479 260 Coils Coil 135 158 - -
Chy12g01479 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Chy12g01479 260 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
Chy12g01479 260 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Chy12g01479 260 MobiDBLite consensus disorder prediction 219 248 - -
Chy12g01479 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy12g01479 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy12g01479 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy12g01479 260 MobiDBLite consensus disorder prediction 219 235 - -
Chy12g01479 260 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Chy12g01479 260 ProSiteProfiles K-box domain profile. 101 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy12g01479 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy12g01479 260 Pfam K-box region 97 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00031 Chy-Chr2:215272 Chy12g01479 Chy-Chr12:18691801 1.48E-38 dispersed
Chy03g00725 Chy-Chr3:9720503 Chy12g01479 Chy-Chr12:18691801 2.11E-28 dispersed
Chy12g01479 Chy-Chr12:18691801 Chy11g01998 Chy-Chr11:25858106 8.91E-41 dispersed
Chy12g01479 Chy-Chr12:18691801 Chy12g01480 Chy-Chr12:18701175 1.14E-51 tandem
Chy12g01479 Chy-Chr12:18691801 Chy03g00724 Chy-Chr3:9696319 1.31E-21 wgd
Chy12g01479 Chy-Chr12:18691801 Chy07g00765 Chy-Chr7:8527001 2.07E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18903 PF01486 K-box 2.80E-29 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01479 K09264 - csv:101207225 485.337