Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01480 ATGAAACTAAAATTTGTTCACAATGATCGGAGAAACGAAGAGAAACAGGGCACTGTGGGTTTGGAGAAAGATGAGAATATGAATGAAACCTACTTTAAAGAAGGTACATACACAATGGACGAAAAATCAGAAAGAATTGAGAAGGGGTTGGTCAGTTTGTTTGCCAAGACTAGAAAGAATATATATATATATTTACACATATATATATATATTTTAAAAAAATTTGAGTATATATTAAATAATATGGGAAGAGGAAGAGTTGAATTGAAGAGAATTGAGAACAAAATTAACAGGCAAGTCACTTTTGCAAAGAGAAGAAATGGTTTGCTTAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAACTTGCTCTCATCATCTTCTCTAACCGTGGTAAACTCTTTGAGTTTTGTAGTGGCTCTAGCATGACTAAAACGTTGGAGAAATATCGAAGGTGTAGTTACGGTATACCGAATGCTACTCATCAAGTAAGTGTGAATCAACCACAGAGCTTTGATGACTATCTGAATCTAAAAGCCACAGTTGAATTCATGCAACAATCTCAGAGAAACCTTTTGGGAGAAGATTTAGGTCCACTGAATGCCAAAGAACTTGAGCAACTTGAACATCAACTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACAAAGCCTACTTCAACAACTTACAGAACTTCAACGCAAGGAACAGATGCTTGTCGAGGACAATCGAGGATTAAAAAAGAAGCTGGAAGAAAGCAGTGCGCAAGTGGCGGTGGCAGCAGCTGGGGCATGGGGCTGGGAAGGTGGCGCCGGAGGGCACAACATGGAGTATCCCAGCCGTGGTGTTGCTTCACAATCAGATGCCTTTTTCCACCCCATAGTTCAACCCACTCCCACTTTACAAATTGGGTACAATTCTATTGGCTCAATGGGAATGAATCATATTGGATCTCCATCCCAAAATGCCAATAACAATGCATTTCACCTTGGCTGGATGATTTAA 1014 39.64 MKLKFVHNDRRNEEKQGTVGLEKDENMNETYFKEGTYTMDEKSERIEKGLVSLFAKTRKNIYIYLHIYIYILKKFEYILNNMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNRGKLFEFCSGSSMTKTLEKYRRCSYGIPNATHQVSVNQPQSFDDYLNLKATVEFMQQSQRNLLGEDLGPLNAKELEQLEHQLETSLERIRSTKTQSLLQQLTELQRKEQMLVEDNRGLKKKLEESSAQVAVAAAGAWGWEGGAGGHNMEYPSRGVASQSDAFFHPIVQPTPTLQIGYNSIGSMGMNHIGSPSQNANNNAFHLGWMI* 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18701175 18716927 - Chy12G220800.1 Chy12g01480 239261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01480 337 Coils Coil 203 226 - -
Chy12g01480 337 ProSiteProfiles MADS-box domain profile. 82 142 IPR002100 GO:0003677|GO:0046983
Chy12g01480 337 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 91 138 IPR002100 GO:0003677|GO:0046983
Chy12g01480 337 PRINTS MADS domain signature 84 104 IPR002100 GO:0003677|GO:0046983
Chy12g01480 337 PRINTS MADS domain signature 104 119 IPR002100 GO:0003677|GO:0046983
Chy12g01480 337 PRINTS MADS domain signature 119 140 IPR002100 GO:0003677|GO:0046983
Chy12g01480 337 SUPERFAMILY SRF-like 83 156 IPR036879 GO:0003677|GO:0046983
Chy12g01480 337 ProSitePatterns MADS-box domain signature. 84 138 IPR002100 GO:0003677|GO:0046983
Chy12g01480 337 Coils Coil 232 252 - -
Chy12g01480 337 SMART madsneu2 82 141 IPR002100 GO:0003677|GO:0046983
Chy12g01480 337 Gene3D - 94 172 IPR036879 GO:0003677|GO:0046983
Chy12g01480 337 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 82 322 - -
Chy12g01480 337 CDD MADS_MEF2_like 83 157 IPR033896 GO:0000977|GO:0045944
Chy12g01480 337 Pfam K-box region 172 253 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy12g01480 337 ProSiteProfiles K-box domain profile. 169 259 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy12g01480 337 PANTHER SERUM RESPONSE FACTOR HOMOLOG 82 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00765 Chy-Chr7:8527001 Chy12g01480 Chy-Chr12:18701175 3.07E-56 dispersed
Chy09g01173 Chy-Chr9:13921137 Chy12g01480 Chy-Chr12:18701175 9.74E-43 dispersed
Chy11g01792 Chy-Chr11:24271663 Chy12g01480 Chy-Chr12:18701175 3.72E-30 dispersed
Chy11g01793 Chy-Chr11:24294112 Chy12g01480 Chy-Chr12:18701175 6.68E-85 dispersed
Chy11g01998 Chy-Chr11:25858106 Chy12g01480 Chy-Chr12:18701175 1.15E-42 dispersed
Chy12g01158 Chy-Chr12:16520377 Chy12g01480 Chy-Chr12:18701175 4.64E-46 dispersed
Chy12g01479 Chy-Chr12:18691801 Chy12g01480 Chy-Chr12:18701175 1.14E-51 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18904 PF01486 K-box 1.40E-24 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01480 K09264 K09260 csv:101204197 474.937