Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01481 ATGGAGTCTTGGAATTATGGTTCTCAAGGGAAGGGATTTCTGTCTGATGAGATGAATTCGTCTACTAATTCACCTCTGAGAAGTAAATATTCTTTGTTGGGTTGGGAATTCAAGAACCCATGTAGTTTTGGGGACAGCATGCTTCTTACAAGTGGTGCTCAGCATGTGGAGAATCAGAGCTTTGGGGAACTGGAATTTCCCCAAATGGTTGGAAAACAATTGCCTGATGATTCTGTCAGTGATGTCTTGAATACTAAAACTGATGGAGGGAGAAACTTGAATCTGGTTTTGCCCACCTCTCATCCACTTCATGGAGAAGAAGAGTCCACTTCAAAGCTCTCTGGCTCCATTGTTGACTCTAACAATCGAGATTCATCTCTTATTGATTTGAAGCTAGGCAGATTTATTGATCAAGGGGATGCTCACAGTTCCAAATACTCCAAGAGAGCTGCAATTTCATCTTCCACTGAATCATCGACTTCTCAGAAGAAAATGCGATCTCAAGGGGTGAATTTCCAGACTGCGTTTTGCCAAGTCTATGGTTGTAACAAAGATCTCAGCTCCTCTAAAGACTACCACAAGAGGCATAAAGTTTGTGAGGTTCATTCAAAGACTGCCAAAGTTATTGTGAATGGCATCGAACAGAGGTTTTGTCAGCAATGCAGCAGGTTTCATTTGCTTGTTGAATTTGATGACGGTAAACGCAGCTGTCGAAAACGGCTTGCAGGCCATAATGAACGAAGAAGAAAGCCTCAAGTCAGTTTTCACTCAGGAAGGGCACAGAGGTTGCTTCAGCCTTATAATGGTATTGGAGACAGCAGATTTCAGGAGAAAACGTTGACTGCAACTTCATTTATCTGCAAAGATATACTGTCTAGTGGTCTGTATTATCCAGAGAAGCTTGGAGAAAACGATTGGTGTAAGCGTGTAAAAGTTGAGGGAAAGAGTGATTATAACTCTATATCTGCAACTTCACTGAGCAACAGGCATCTGCCTGTGAAATCTCCCTTGCTTCCTTATGATTTTGAAGTACAGATTCCTTCTTTTCAAGAAAATGGAACTAATACAGCACCTACAGTAAACATGTTAAGTGAGACAACTTGCCAATATTCGCATAATGTGGGAGGTCCCCATATTGATACACATCCTTTGTTCCACCCTACCTTATCAAGCGAAGACTTTGGAGTTTATGATGCAGCATCAACCATCCAAGGACTTTCTGGAATTCCGGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAGTGCATCAAACCATCCATCCATAGTTCACATTCCTCGTGCTTTCATCATGTCCGAGAGTCAATCGAATTATAGCATGAGTGAACTCTCCGAAAAGCTCATGGGAGTGAGCCCACAGGCTTCTTCAACTGGGATTACGAGTAAATTTGCCTCGGGGATGAGTGAAGCTCAAATGGGTCCCATACCGACTTGTGAAAGTAGTGATCGTACTGTCACCTTTCAGATTCCTGGTAGAGTTCTTCATAGATCAGGTTTGGCAAATCCTAAAGCTAACATTTCATATGAACGCACTCCAACTATTGACTTGCTTCAACTTTCATCACAACTCCAGCGAGTGGAACATCAAAGGCACTCCATGCAGGTACATAAATAA 1644 42.27 MESWNYGSQGKGFLSDEMNSSTNSPLRSKYSLLGWEFKNPCSFGDSMLLTSGAQHVENQSFGELEFPQMVGKQLPDDSVSDVLNTKTDGGRNLNLVLPTSHPLHGEEESTSKLSGSIVDSNNRDSSLIDLKLGRFIDQGDAHSSKYSKRAAISSSTESSTSQKKMRSQGVNFQTAFCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVSFHSGRAQRLLQPYNGIGDSRFQEKTLTATSFICKDILSSGLYYPEKLGENDWCKRVKVEGKSDYNSISATSLSNRHLPVKSPLLPYDFEVQIPSFQENGTNTAPTVNMLSETTCQYSHNVGGPHIDTHPLFHPTLSSEDFGVYDAASTIQGLSGIPDSGCALSLLSSQSQSASNHPSIVHIPRAFIMSESQSNYSMSELSEKLMGVSPQASSTGITSKFASGMSEAQMGPIPTCESSDRTVTFQIPGRVLHRSGLANPKANISYERTPTIDLLQLSSQLQRVEHQRHSMQVHK* 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18717450 18721217 + Chy12G220810.1 Chy12g01481 239262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01481 547 Pfam SBP domain 177 250 IPR004333 GO:0003677
Chy12g01481 547 SUPERFAMILY SBT domain 175 255 IPR036893 GO:0003677|GO:0005634
Chy12g01481 547 Gene3D - 169 238 IPR036893 GO:0003677|GO:0005634
Chy12g01481 547 MobiDBLite consensus disorder prediction 147 165 - -
Chy12g01481 547 MobiDBLite consensus disorder prediction 146 165 - -
Chy12g01481 547 MobiDBLite consensus disorder prediction 1 22 - -
Chy12g01481 547 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 546 IPR044817 GO:0003677
Chy12g01481 547 PANTHER 1 PROTEIN, PUTATIVE-RELATED 44 546 - -
Chy12g01481 547 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01795 Chy-Chr11:24330473 Chy12g01481 Chy-Chr12:18717450 4.20E-38 dispersed
Chy12g01157 Chy-Chr12:16513080 Chy12g01481 Chy-Chr12:18717450 2.56E-35 dispersed
Chy12g01481 Chy-Chr12:18717450 Chy07g00064 Chy-Chr7:584695 1.07E-32 dispersed
Chy04g01191 Chy-Chr4:18281127 Chy12g01481 Chy-Chr12:18717450 4.59E-32 transposed
Chy11g01701 Chy-Chr11:23467219 Chy12g01481 Chy-Chr12:18717450 6.70E-34 transposed
Chy12g01481 Chy-Chr12:18717450 Chy02g02404 Chy-Chr2:27781911 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18905 PF03110 SBP 3.00E-31 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01481 - - csv:101206747 1054.66