Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01481 ATGGAGTCTTGGAATTATGGTTCTCAAGGGAAGGGATTTCTGTCTGATGAGATGAATTCGTCTACTAATTCACCTCTGAGAAGTAAATATTCTTTGTTGGGTTGGGAATTCAAGAACCCATGTAGTTTTGGGGACAGCATGCTTCTTACAAGTGGTGCTCAGCATGTGGAGAATCAGAGCTTTGGGGAACTGGAATTTCCCCAAATGGTTGGAAAACAATTGCCTGATGATTCTGTCAGTGATGTCTTGAATACTAAAACTGATGGAGGGAGAAACTTGAATCTGGTTTTGCCCACCTCTCATCCACTTCATGGAGAAGAAGAGTCCACTTCAAAGCTCTCTGGCTCCATTGTTGACTCTAACAATCGAGATTCATCTCTTATTGATTTGAAGCTAGGCAGATTTATTGATCAAGGGGATGCTCACAGTTCCAAATACTCCAAGAGAGCTGCAATTTCATCTTCCACTGAATCATCGACTTCTCAGAAGAAAATGCGATCTCAAGGGGTGAATTTCCAGACTGCGTTTTGCCAAGTCTATGGTTGTAACAAAGATCTCAGCTCCTCTAAAGACTACCACAAGAGGCATAAAGTTTGTGAGGTTCATTCAAAGACTGCCAAAGTTATTGTGAATGGCATCGAACAGAGGTTTTGTCAGCAATGCAGCAGGTTTCATTTGCTTGTTGAATTTGATGACGGTAAACGCAGCTGTCGAAAACGGCTTGCAGGCCATAATGAACGAAGAAGAAAGCCTCAAGTCAGTTTTCACTCAGGAAGGGCACAGAGGTTGCTTCAGCCTTATAATGGTATTGGAGACAGCAGATTTCAGGAGAAAACGTTGACTGCAACTTCATTTATCTGCAAAGATATACTGTCTAGTGGTCTGTATTATCCAGAGAAGCTTGGAGAAAACGATTGGTGTAAGCGTGTAAAAGTTGAGGGAAAGAGTGATTATAACTCTATATCTGCAACTTCACTGAGCAACAGGCATCTGCCTGTGAAATCTCCCTTGCTTCCTTATGATTTTGAAGTACAGATTCCTTCTTTTCAAGAAAATGGAACTAATACAGCACCTACAGTAAACATGTTAAGTGAGACAACTTGCCAATATTCGCATAATGTGGGAGGTCCCCATATTGATACACATCCTTTGTTCCACCCTACCTTATCAAGCGAAGACTTTGGAGTTTATGATGCAGCATCAACCATCCAAGGACTTTCTGGAATTCCGGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAGTGCATCAAACCATCCATCCATAGTTCACATTCCTCGTGCTTTCATCATGTCCGAGAGTCAATCGAATTATAGCATGAGTGAACTCTCCGAAAAGCTCATGGGAGTGAGCCCACAGGCTTCTTCAACTGGGATTACGAGTAAATTTGCCTCGGGGATGAGTGAAGCTCAAATGGGTCCCATACCGACTTGTGAAAGTAGTGATCGTACTGTCACCTTTCAGATTCCTGGTAGAGTTCTTCATAGATCAGGTTTGGCAAATCCTAAAGCTAACATTTCATATGAACGCACTCCAACTATTGACTTGCTTCAACTTTCATCACAACTCCAGCGAGTGGAACATCAAAGGCACTCCATGCAGGTACATAAATAA 1644 42.27 MESWNYGSQGKGFLSDEMNSSTNSPLRSKYSLLGWEFKNPCSFGDSMLLTSGAQHVENQSFGELEFPQMVGKQLPDDSVSDVLNTKTDGGRNLNLVLPTSHPLHGEEESTSKLSGSIVDSNNRDSSLIDLKLGRFIDQGDAHSSKYSKRAAISSSTESSTSQKKMRSQGVNFQTAFCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVSFHSGRAQRLLQPYNGIGDSRFQEKTLTATSFICKDILSSGLYYPEKLGENDWCKRVKVEGKSDYNSISATSLSNRHLPVKSPLLPYDFEVQIPSFQENGTNTAPTVNMLSETTCQYSHNVGGPHIDTHPLFHPTLSSEDFGVYDAASTIQGLSGIPDSGCALSLLSSQSQSASNHPSIVHIPRAFIMSESQSNYSMSELSEKLMGVSPQASSTGITSKFASGMSEAQMGPIPTCESSDRTVTFQIPGRVLHRSGLANPKANISYERTPTIDLLQLSSQLQRVEHQRHSMQVHK* 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18717450 18721217 + Chy12G220810.1 Chy12g01481 239262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01481 547 Pfam SBP domain 177 250 IPR004333 GO:0003677
Chy12g01481 547 SUPERFAMILY SBT domain 175 255 IPR036893 GO:0003677|GO:0005634
Chy12g01481 547 Gene3D - 169 238 IPR036893 GO:0003677|GO:0005634
Chy12g01481 547 MobiDBLite consensus disorder prediction 147 165 - -
Chy12g01481 547 MobiDBLite consensus disorder prediction 146 165 - -
Chy12g01481 547 MobiDBLite consensus disorder prediction 1 22 - -
Chy12g01481 547 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 546 IPR044817 GO:0003677
Chy12g01481 547 PANTHER 1 PROTEIN, PUTATIVE-RELATED 44 546 - -
Chy12g01481 547 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01481 - - - csv:101206747 1054.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g01795 Chy-Chr11:24330473 Chy12g01481 Chy-Chr12:18717450 4.20E-38 dispersed
Chy12g01157 Chy-Chr12:16513080 Chy12g01481 Chy-Chr12:18717450 2.56E-35 dispersed
Chy12g01481 Chy-Chr12:18717450 Chy07g00064 Chy-Chr7:584695 1.07E-32 dispersed
Chy04g01191 Chy-Chr4:18281127 Chy12g01481 Chy-Chr12:18717450 4.59E-32 transposed
Chy11g01701 Chy-Chr11:23467219 Chy12g01481 Chy-Chr12:18717450 6.70E-34 transposed
Chy12g01481 Chy-Chr12:18717450 Chy02g02404 Chy-Chr2:27781911 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01191 . 181 1014 SBP-box Gene Family AT2G47070 55.5 4.4e-240 827.8
Chy04g01191 . 25 1014 SBP-box Gene Family AT3G60030 54.4 1.3e-278 956.1
Chy11g01795 . 15 163 SBP-box Gene Family AT5G50570 55.3 3.8e-40 162.5
Chy07g00438 . 1 1032 SBP-box Gene Family AT1G20980 50.3 7.4e-262 900.6
Chy07g00438 . 1 693 SBP-box Gene Family AT1G76580 50.8 7.4e-165 577.8
Chy12g01481 . 121 279 SBP-box Gene Family AT1G69170 54.1 1.7e-41 167.2
Chy04g01191 . 181 1014 SBP-box Gene Family AT2G47070 55.5 4.4e-240 827.8
Chy12g01481 . 121 279 SBP-box Gene Family AT1G69170 54.1 1.7e-41 167.2
Chy04g01191 . 25 1014 SBP-box Gene Family AT3G60030 54.4 1.3e-278 956.1
Chy11g01795 . 15 163 SBP-box Gene Family AT5G50570 55.3 3.8e-40 162.5
Chy11g01795 . 15 163 SBP-box Gene Family AT5G50670 55.3 3.8e-40 162.5
Chy07g00438 . 1 1032 SBP-box Gene Family AT1G20980 50.3 7.4e-262 900.6
Chy07g00438 . 1 693 SBP-box Gene Family AT1G76580 50.8 7.4e-165 577.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001097 2 4 1 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 12 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18905 PF03110 SBP 3.00E-31 No_clan Chy TF