Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01483 ATGAAGATGACGTGTGAGGAGAAAGTTAAGGAATTAGGTAATTACGTGGTGGCCGACCCTCCACCTCCACCTCCACATCTGGACTGGACTCCTTCAAAGCCGCCGGTGGCCAACTTGGCCGCAACAGTGACTATAACAAACTCTCAGACATACCGACATATCACGAGCCCTGGATGGACCTTGGGATGGGTATGGGCAAAGGGAGAGGTCATTTGGTCCATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCAGTTCCACGTTTACAGGAACTATACCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCTGGTGCTCCTTATAACAAACAGGTAGCTATGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAAGATCCTTTATCTGCTGTCTCTGCCTTCCAATTGACAGTTGGTCATTCCGGTAGTTCGAATAAGACAGTGAGACTTCCCAAGAATTTCACCTTGAATGGTCCAGGGCTGGGTTACACATGTAGCCAGGCAAAGATTGTGCCACCATCAGCTTTCTACTCATCTGATGGTCGTCGAAAAACTAATGCATTGAGTAAATATCACAACTACACCAAACCATAA 612 47.06 MKMTCEEKVKELGNYVVADPPPPPPHLDWTPSKPPVANLAATVTITNSQTYRHITSPGWTLGWVWAKGEVIWSMQGAEATDQGDCSSSTFTGTIPHSCKRDPSVVDLLPGAPYNKQVAMCCKGGVLTSWGQDPLSAVSAFQLTVGHSGSSNKTVRLPKNFTLNGPGLGYTCSQAKIVPPSAFYSSDGRRKTNALSKYHNYTKP* 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18727904 18730515 + Chy12G220830.1 Chy12g01483 239264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01483 203 Pfam COBRA-like protein 41 197 IPR006918 GO:0010215|GO:0031225
Chy12g01483 203 PANTHER PROTEIN COBRA 39 197 IPR006918 GO:0010215|GO:0031225
Chy12g01483 203 PANTHER COBRA-LIKE PROTEIN 39 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01483 - - - csv:101203708 322.783
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy02g02401 Chy12g01483 CCT
Chy02g02401 Chy12g01483 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00751 Chy-Chr7:8109623 Chy12g01483 Chy-Chr12:18727904 1.14E-75 dispersed
Chy12g01483 Chy-Chr12:18727904 Chy01g00699 Chy-Chr1:5113736 4.07E-37 dispersed
Chy12g01483 Chy-Chr12:18727904 Chy02g02401 Chy-Chr2:27765988 1.25E-69 wgd
Chy12g01483 Chy-Chr12:18727904 Chy07g00750 Chy-Chr7:8105336 1.08E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g446 . . Bda06g00513 . Bpe12g00518 . . . Cmo13g01107 . Cma10g00289 Cma11g00218 Car10g00271 Car11g00197 Sed08g0288 . Cpe04g01449 Bhi02g00081 Tan09g2023 Cmetu02g0745 . Hepe09g0285 . . Cla06g01531 Cam06g1688 Cec06g1750 Cco06g1748 Clacu06g1655 Cmu06g1602 Cre06g2414 . . Cone13ag0029 . . . Chy12g01483 Cme12g01924 . . . . . . . . . Cmo10g00308 Cmo11g00221 Cma13g01062 . Car13g00898 . . Cpe18g00713 Bhi08g01067 . . Lac10g0179 Hepe07g2448 . . Cla04g01143 Cam04g1196 Cec01g1708 Cco01g1753 Clacu04g1222 Cmu04g1202 Cre01g1500 Lsi06g01402 Csa01g00341 Chy02g02401 Cme02g01813
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g02401 CCT,ECH 48 447 COBRA Gene Family AT5G60920 80.5 9.8e-210 726.1
Chy07g00750 . 42 448 COBRA Gene Family AT5G60920 74.2 4.7e-196 680.6
Chy02g02402 . 55 471 COBRA Gene Family AT5G60920 64.2 1.2e-170 596.3
Chy06g01144 . 50 444 COBRA Gene Family AT5G60920 53.9 5.3e-131 464.5
Chy07g00751 . 123 288 COBRA Gene Family AT5G60920 76.5 1.9e-80 296.6
Chy12g01483 CCT,ECH 27 194 COBRA Gene Family AT5G60920 61.3 7.1e-59 224.9
Chy02g02401 CCT,ECH 23 451 COBRA Gene Family AT3G02210 73.9 8.1e-205 709.9
Chy07g00750 . 12 451 COBRA Gene Family AT3G02210 73.0 5.4e-201 697.2
Chy02g02402 . 27 472 COBRA Gene Family AT3G02210 61.6 1.7e-170 595.9
Chy06g01144 . 20 439 COBRA Gene Family AT3G02210 55.0 2.4e-140 495.7
Chy07g00751 . 97 288 COBRA Gene Family AT3G02210 70.1 5.1e-82 302.0
Chy12g01483 CCT,ECH 41 194 COBRA Gene Family AT3G02210 68.8 9.3e-60 228.0
Chy02g02401 CCT,ECH 21 444 COBRA Gene Family AT3G29810 74.3 2.4e-201 698.4
Chy07g00750 . 27 446 COBRA Gene Family AT3G29810 72.4 4.1e-193 671.0
Chy02g02402 . 38 474 COBRA Gene Family AT3G29810 61.3 1.7e-167 585.9
Chy06g01144 . 32 448 COBRA Gene Family AT3G29810 54.7 6.8e-140 494.2
Chy07g00751 . 106 288 COBRA Gene Family AT3G29810 71.0 1.7e-82 303.5
Chy12g01483 CCT,ECH 41 194 COBRA Gene Family AT3G29810 61.0 1.0e-55 214.5
Chy02g02402 . 32 389 COBRA Gene Family AT5G15630 77.4 1.1e-174 609.4
Chy02g02401 CCT,ECH 31 361 COBRA Gene Family AT5G15630 73.5 3.0e-151 531.6
Chy07g00750 . 27 356 COBRA Gene Family AT5G15630 68.2 1.3e-143 506.1
Chy06g01144 . 38 360 COBRA Gene Family AT5G15630 50.9 2.9e-98 355.5
Chy07g00751 . 101 288 COBRA Gene Family AT5G15630 82.4 7.2e-97 350.9
Chy12g01483 CCT,ECH 27 194 COBRA Gene Family AT5G15630 60.7 5.0e-58 221.9
Chy02g02401 CCT,ECH 30 224 COBRA Gene Family AT5G60950 58.2 2.2e-64 242.3
Chy07g00750 . 23 218 COBRA Gene Family AT5G60950 59.4 2.4e-63 238.8
Chy07g00751 . 100 288 COBRA Gene Family AT5G60950 55.3 2.2e-53 205.7
Chy06g01144 . 31 432 COBRA Gene Family AT1G09790 60.5 3.0e-151 531.9
Chy07g00750 . 23 425 COBRA Gene Family AT1G09790 53.7 9.5e-134 473.8
Chy02g02401 CCT,ECH 32 432 COBRA Gene Family AT1G09790 53.6 4.0e-132 468.4
Chy12g01483 CCT,ECH 43 197 COBRA Gene Family AT1G09790 50.3 8.6e-42 168.3
Chy06g00736 . 35 644 COBRA Gene Family AT4G16120 66.6 1.8e-253 872.1
Chy06g01797 . 56 669 COBRA Gene Family AT4G16120 53.1 3.8e-203 704.9
Chy04g00985 . 49 653 COBRA Gene Family AT4G16120 52.5 2.7e-201 698.7
Chy06g00736 . 28 635 COBRA Gene Family AT3G16860 64.7 4.1e-242 834.3
Chy06g01797 . 60 661 COBRA Gene Family AT3G16860 52.6 2.4e-194 675.6
Chy04g00985 . 47 654 COBRA Gene Family AT3G16860 51.2 4.6e-193 671.4
Chy06g00736 . 17 630 COBRA Gene Family AT5G49270 62.0 3.6e-238 821.2
Chy06g01797 . 60 672 COBRA Gene Family AT5G49270 50.7 1.1e-194 676.8
Chy04g00985 . 53 649 COBRA Gene Family AT5G49270 51.7 1.0e-192 670.2
Chy04g00985 . 10 672 COBRA Gene Family AT3G20580 59.9 3.0e-248 854.7
Chy06g01797 . 56 676 COBRA Gene Family AT3G20580 62.6 3.0e-248 854.7
Chy06g00736 . 6 627 COBRA Gene Family AT3G20580 52.7 5.6e-202 701.0
Chy06g01797 . 60 677 COBRA Gene Family AT4G27110 63.1 4.2e-242 834.3
Chy04g00985 . 5 670 COBRA Gene Family AT4G27110 57.6 5.7e-231 797.3
Chy06g00736 . 6 645 COBRA Gene Family AT4G27110 51.6 9.8e-199 690.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0041369 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1