Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01484 ATGGAAGGCAGCTTCGAACAGACCCTTCAAGATGGACAGCTTTACAGACAAGTCAATTCTCTCATTGTCGCTCATCTTCGTGATCACAACCTCACCCAGGCAAGCTTTTCTCTTCAAGCTGCGAGTGCTGCTGCTTCAGCTACAATGACACCACTGAATGTTGATGTTCCACCTAAAAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGCGGTGGAGAAAGATGAGACGTTAAGAGGGAGTCCTGCTTCTGCATTGTACGACCTTGGTTCATCAATGCCCACTACATTTGGATCTGCACAGCCCTCTCGTCCTTCTGCTATCGACTTCAGCACTACACAGGATACAAAAGGTTCGTCGAAGAACTTTCCAAAGCACGAGACTCGACATCTTTCCGAGCATAAGAATGTTGCCAGATGTGCAAGATTCAGTGCTGATGGGAGATTTGTTGCAACTGGAAGTGCGGATATGTCAATAAAGCTGTTTGAGGTGGCAAAGATCAAGCAGATGATGCTGCCAGATGCGAAAGATGGTCCTGTCCGACCGGTTATAAGGACATTTTATGATCACATTCAACCAATAAATGATTTAGATTTTCATCCTCAGAATACTGTTCTTGTATCTGGTGCAAAAGATCACACAATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTTAGAGTTATCCAGGATACTCATAACGTGCGATCTATATCTCTTCATCCTTCAGGAGATTATCTCTTAGCAGGAACGGATCATCAGATTGCCCACTTGTATGATGTCAATACTTTTCAGTGTTTTCTATCTGCAAATGTTCCTGAAATAGGAAATAATGGAGCAATAAATCAGATCAGGTATTCGGCAACAGGTAGCATGTATGTCACTGCTTCGAAAGACGGCGCAGTTCGTTTATGGGACGGCATTGGTGCAAAATGTATTCGGTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTATGTTCTTTCTTGTGGAAAGGACTCGAGTGTAAAGCTATGGGACGTGGGGACGGGGAGACTAGTCAAACAATATGTTGGCGCCACTCATATGCAATTGAGGTGTCAGGCTGTATTCAATGATACTGAGGAGTTTGTGCTATCAATAGATGAACCAAGCAACGAGATTGTTATTTGGGATGCTTTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCTAACCATGTCGGTGCACCACGATGGCTCGAGCACTCACCAACAGAGTCGGCCTTCATTTCCTGCGGGACTGATAAATCAATACGTTTTTGGAAGGAAACTCTCTAG 1332 44.22 MEGSFEQTLQDGQLYRQVNSLIVAHLRDHNLTQASFSLQAASAAASATMTPLNVDVPPKKLMELVAKGLAVEKDETLRGSPASALYDLGSSMPTTFGSAQPSRPSAIDFSTTQDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLVSGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHQIAHLYDVNTFQCFLSANVPEIGNNGAINQIRYSATGSMYVTASKDGAVRLWDGIGAKCIRSIVSAHGTAEATSAKFTKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL* 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18732631 18737179 + Chy12G220840.1 Chy12g01484 239265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01484 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 220 - -
Chy12g01484 443 ProSitePatterns Trp-Asp (WD) repeats signature. 339 353 IPR019775 -
Chy12g01484 443 CDD WD40 126 440 - -
Chy12g01484 443 MobiDBLite consensus disorder prediction 95 118 - -
Chy12g01484 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Chy12g01484 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 130 171 IPR001680 GO:0005515
Chy12g01484 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 308 IPR001680 GO:0005515
Chy12g01484 443 SMART WD40_4 265 308 IPR001680 GO:0005515
Chy12g01484 443 SMART WD40_4 224 262 IPR001680 GO:0005515
Chy12g01484 443 SMART WD40_4 311 352 IPR001680 GO:0005515
Chy12g01484 443 SMART WD40_4 179 218 IPR001680 GO:0005515
Chy12g01484 443 SMART WD40_4 400 440 IPR001680 GO:0005515
Chy12g01484 443 SMART WD40_4 123 162 IPR001680 GO:0005515
Chy12g01484 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 328 361 IPR001680 GO:0005515
Chy12g01484 443 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 2 442 IPR044633 GO:0005848|GO:0031124
Chy12g01484 443 Pfam WD domain, G-beta repeat 313 352 IPR001680 GO:0005515
Chy12g01484 443 Pfam WD domain, G-beta repeat 234 257 IPR001680 GO:0005515
Chy12g01484 443 Pfam WD domain, G-beta repeat 278 308 IPR001680 GO:0005515
Chy12g01484 443 Pfam WD domain, G-beta repeat 127 161 IPR001680 GO:0005515
Chy12g01484 443 Pfam WD domain, G-beta repeat 183 218 IPR001680 GO:0005515
Chy12g01484 443 MobiDBLite consensus disorder prediction 95 129 - -
Chy12g01484 443 Gene3D - 110 442 IPR015943 GO:0005515
Chy12g01484 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 308 - -
Chy12g01484 443 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Chy12g01484 443 PRINTS G protein beta WD-40 repeat signature 295 309 IPR020472 -
Chy12g01484 443 PRINTS G protein beta WD-40 repeat signature 339 353 IPR020472 -
Chy12g01484 443 SUPERFAMILY WD40 repeat-like 122 440 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01484 K14406 CSTF1; cleavage stimulation factor subunit 1 - csv:101206503 856.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01484 Chy-Chr12:18732631 Chy02g00792 Chy-Chr2:4950095 1.47E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g447 . . . . . . . . Cmo13g01108 . . . . . . Cpe20g00085 . . . . . . . . . . . . . . . . Cone16ag0219 . . Lsi02g00134 Csa01g00616 Chy12g01484 Cme12g01925 . . Bda11g01767 . . . . . Sed08g2132 . . Cma13g01063 . Car13g00899 . . . Bhi08g01068 Tan05g2342 Cmetu12g1898 Lac10g0178 Hepe07g2449 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009578 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 32