Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01493 ATGGCGAAAGCTGCTTCTTCTTTATTGCAAACCCTAAGGCGCTACATTAAGAAACCTTGGGAGATCACTGGCCCGTGTGCAGATCCAGAGTACAGATCGGCGGTTCCGAGCGCCTTAGAGTACAGGGTCGTTTGCCCCGCCACCATAAAGGAGAAAGCCATTATCCCGACATCCAATCCCGAAACCGTTTTTGACATTAAGTATTACACTCGCGACCAGCGTCGGAATCGCCCTCCGATTCGACGCACCATCCTCAAGAAACCCGACGTCGAGAAGATGATGAAAGAGATCAAATTCGACCCTGCTGACTTCCCCAAAGTTTATCTCACTGCCGCGATTGAGGAGGATATGAATACCCATGGGGATGGCATTTGTCATTTACAGATCATTGCCAATGCAGATGGTAGGATAGCTGAATATCTTGCCTCTTTATGGATGGTTTGGTGGGTTCTTAAATTTTTTTCAGATCTGCTTGCTGCATTCTGGATTATTTCCTTTTGTTACTCTTGTCTTCTGCTCGATTTTCATTGCTGCTATTCTATAGCATTGTTCTTTGCGCTCTGGGCAATGTTCTCTTCAGCTTGTATTCCTCAACTCTGCTTCTCTTTCAATGTTAACCTGAGAGAAGAAGGTGCTCATGATGAAGCACAACAAAGGAAGGGGAAAATGAAGAAAGCAAGAACATGTTCAAGACAAGGGCAATTTCTAAGAGGCAATCCAAGAATTTTTAGGGTTTCACCATTTTTTGGAGGTAAAGATAGGCACAGCAAAGTTTGTACAATAAAAGGGTTAAGAGATAGAAGGATTAGGCTTTCAATTCCAACAGCAATTCAACTTTATGATTTGCAAAACAAACTTGGTTTAAGCCAACCCAGCAAAGTCATTGATTGGCTTATTGATGTCACAAGGTTTGAAATTGATAAGCTCCCACCACTCCCTTTTCCAAAAGATTTTGACCCAAATGCTTCAATTCTTCACCATTCTGATATTGGAGATGCTGCTTTCAAGGCCAAAAATGAAGAAACTGATCACACACTTTTGGTTCAAACCAATGACATTAATGCAGACTGTTCCCATTTTGAACCTCCAACCTTTCCATTCCCCTTCATGGACGATCAGACTAATTCAGCTCCATTTTCCTTCTGA 1146 42.5 MAKAASSLLQTLRRYIKKPWEITGPCADPEYRSAVPSALEYRVVCPATIKEKAIIPTSNPETVFDIKYYTRDQRRNRPPIRRTILKKPDVEKMMKEIKFDPADFPKVYLTAAIEEDMNTHGDGICHLQIIANADGRIAEYLASLWMVWWVLKFFSDLLAAFWIISFCYSCLLLDFHCCYSIALFFALWAMFSSACIPQLCFSFNVNLREEGAHDEAQQRKGKMKKARTCSRQGQFLRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVIDWLIDVTRFEIDKLPPLPFPKDFDPNASILHHSDIGDAAFKAKNEETDHTLLVQTNDINADCSHFEPPTFPFPFMDDQTNSAPFSF* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18794826 18798590 - Chy12G220930.1 Chy12g01493 239274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01493 381 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 209 318 - -
Chy12g01493 381 Pfam TCP family transcription factor 251 319 IPR017887 -
Chy12g01493 381 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 209 318 IPR005333 GO:0003700
Chy12g01493 381 ProSiteProfiles TCP domain profile. 251 309 IPR017887 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02437 Chy12g01493 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01493 Chy-Chr12:18794826 Chy12g01453 Chy-Chr12:18507587 9.09E-13 dispersed
Chy12g01493 Chy-Chr12:18794826 Chy02g02437 Chy-Chr2:28028803 5.80E-38 wgd
Chy12g01493 Chy-Chr12:18794826 Chy02g02382 Chy-Chr2:27643162 1.73E-11 wgd
Chy12g01493 Chy-Chr12:18794826 Chy07g00740 Chy-Chr7:7726894 2.02E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18906 PF03634 TCP 1.30E-22 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01493 - - csv:101204687 345.125