Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01508 ATGGGGGAGGAGAAGAGGCACCAGATGATGCAGAATCTCTTCGGAGATCAATCCGAGGAGGAGGAAGAGATTGATTCAGAGCATGAGTCCAATCCTCAACCCAATTATGCCTCTGATGAAGGAGAAGGAGGGGCGGAGCCTGAAGGTGAAGGTGAAGTGGAGGGACATGGGGAGGTGGAAATTGAGAGTGAAGGTGAGTTGCAGGATGCCGATCCGGATCCTGGGGAAAGTGAGGGTGAAAGGGATCAAAGTTCTCAAGAAGTAGACGTGGGTCACCATAGAGAAGAAGAAAGTGAAGGGAAAGAGGTGGATAGCGACGATAGGGAAGAATATGATCAAAGAGTGGTAACAAGCAGGAGGCATGATTTAGTTGAAAGTGAATCCGAGAGGTCCGAAGAAAACCATTATATTGACAATGAAGACGAAGAGGTGGATCAAACTAGGAGTCCAAGGGAGGAGGAGGATCACAATTCACATCCAGTTGCTGAAATTCGTGACGTATTTGGTGACTCTGACGAGGAAGAGGAAGCAGAATATGCAGTTGGAAACGAAATTAAGCAAGATTCAGCTAGGTCACCTATGGAAGAGGAGGGGAGCTTTGAGAAGAGTCCAAGACCTGATGATATAATTCCTGATGAAGATGCTCGGTACGAGTCAGATGCTCGTTATGAATCAGAAGAGGAAAATTTTGAGGTAAAACACAAAGAGAAGCCAGTTGGGCCTCCATTGGAGCTAGAGATTCCATTACGTCCTCCTCCTGCTCGCCCAGAAAAGATGAACATGATAAAAGTTTCCAATATTATGGGCATTGACCCAAAACCATTTGATCCCAAAACATATGTGGAGGAGGATATATTTGTGACAGACGAATCTGGAGCCAACAAACGCATACGCTTGGAAAATAACATTGTGCGCTGGAGGACAGTTAGGAAACCTGATGGCACAACAAAGTATGAAAGCAATGCACGATTTGTGAGGTGGTCAGATGGCAGTTTGCAACTGTTAATTGGGAATGAAGTGCTTGACATAAATGTGCAAGATGCAAAGCATGATCAAGCACACTTGTTTCTTCGGCATGGGAAGGGAATTTTGCAATCTCAAGGTAGGCTTATGAGGAAGATGAGGTTCATTCCGTCATCCCTGACATCAAATTCTCACCGCTTGTTAACTGCTTTGGTTGATTCACGACATAAGAAGGTGTATAAGGTTAAGAATTGCATAACGGACATTGATCCTGAAAGGGAAAAGGAGGAAAAAGAAAGGGCTGAAAGTCAAACAATCCGGGCAAATGTGCTTCTTAATCGGAAAAAGGAAAAGGTTAGCAAGAAATATGCTCCTGTCATTGATAGAAGGCGCCAACTATCACCTGGGTTCTTGGAAGATGCACTTGAGGAGGAAGATGAAACAGATTATATTGATTCACGTCGCTCCCGTCGCCGCTTTGAGGAAGATTTGGAAATGGAAGCTCGAGCAGAAAAACGTATTATGAATGCAAAGAAGGGAACTAGGGACATCCCTCGGAAGCCAACCTTTCACGCTTCTAAATCATCTGGGCGTCCTGTGGATTTCTCAGACAGTGACAGGGAAGAGTCTGAGTACGAAACTGAAGGGGAAGATGATGCTCCTGGGAGAGTTGAAGAACCAGAGCAGGAGTATGAGGAAGATGGGGAAGAAGATGATGAACGTGATGAAGAGGCAGAAGTTAATGAAGTTTCAGATGTGGATGAAGACGCTGAGGAGCCCAAACATAAGGTTAGAGATTATGGGAGCAGTCACAAGCGCAAGGGGATTGAGTCTGATGAGGAGTCACCTCCAAGAAAGGTTGCAACCCACCGTAGGATGGCAGTTAATCCGGCGATGTCTAGCTCCTTCCAGAGCTCTCCATTTTCATTGCATAAGAACACCATGCCTCCCCCAGTTTTTTTCGCGGATATGAATCCTGATAAATTCACCCACAAGACAAATGAGGCTCTAGCTGGAGCTCATGAATTGGCATTGAATTCTGGCCATGCTCAATTGACACCGCTTCATTTGGCGGTTGCTTTGGTTTCTGATCCGAGTGGGATATTGAGCCAAGCGATTGCTAGTTCCGGCGGTGAAAATGCTCATAAAGAAGTGGAGACGGTTTTCAAGCGGGCGTTGAAGAAGCTACCATCTCAATCTCCTGCACCTGATGAAGTGCCGGCGAGTACTACTCTGATTAAGGTGATTCGAAGAGCACAAGCTGCGCAGAAATCGCGAGGAGACACGCATTTAGCCGTTGATCAATTGGTTCTTGGCCTTCTGGAGGATTCTCAGATTGGGGATTTGCTTAAGGAAGCTGGTGTCACCACCGCGAAAGTTAAATCTGAGGTCGAGAAACTCCGTGGAAAAGAAGGAAAGAAAGTGGAGAGTGCATCTGGAGACACAACCTTCCAGGCACTCAAGACTTATGGGCGAGACCTGGTAGAACAAGCGGGGAAACTCGACCCAGTTATTGGCCGTGATGAGGAAATTCGTAGAGTGGTGAGGATTTTATCAAGAAGAACTAAGAATAACCCAGTTCTTATTGGGGAGCCTGGTGTTGGTAAAACTGCAGTGGTTGAAGGATTAGCCCAGCGAATTGTAAGAGGAGATGTCCCAAGTAATCTTGCTGATGTGAGGCTCATAGCTTTGGATATGGGTGCTCTGGTGGCAGGGGCTAAGTACAGAGGAGAATTTGAAGAGAGATTGAAGGCAGTATTGAAGGAAGTTGAAGATGCAGAAGGGAAAGTCATATTGTTTATTGACGAGATTCATCTTGTTCTTGGTGCTGGAAGAACTGAAGGGTCTATGGATGCTGCCAATCTTTTCAAGCCAATGCTGGCTAGAGGGCAGTTACGTTGCATTGGGGCAACTACTCTTGAAGAGTACAGGAAGTATGTTGAGAAGGATGCAGCATTTGAGAGAAGGTTTCAACAAGTTTATGTGGCTGAACCGAGCGTGCCTGACACTATCAGTATCCTTCGAGGATTGAAAGAGAGATACGAAGGTCACCATGGTGTTAGAATTCAAGACCGAGCTCTTGTCGTTGCAGCGCAGCTATCGAGTCGATATATTACTGGGCGACACCTTCCTGATAAGGCAATTGATTTAGTTGATGAAGCTTGTGCAAATGTGAGAGTCCAGCTCGATAGCCAGCCTGAAGAAATTGATAACTTGGAGAGGAAGCGAATGCAGCTTGAAGTTGAACTTCATGCTCTTGAAAAGGAGAAGGATAAGGCTAGTAAAGCTCGTCTTGTTGAAGTGAGGAGAGAGCTTGATGATTTGAGAGATAAGCTTCAACCTTTGTTGATGAAATATCGCAAGGAGAAAGAAAGGATTGATGAGATTAGAAGACTTAAACAAAGGAGGGAGGAACTACAAATAGCTTTGCAAGAGGCTGAAAGGAGATATGATTTGGCGAGGGCTGCTGATTTGCGATATGGAGCAATCCAAGAAGTAGAATCTGCAATAGCACGGATCGAAGGGAACACTGATGAGAACCTGATGTTAACCGAAATTGTTGGACCGGAACAAGTAGCGGAAGTGGTGAGCCGCTGGACTGGAATACCTGTCACAAGGCTCGGCCAGAATGATAAGGAGAGACTGGTTGGGCTTGCTGACAGACTGCACAAGAGAGTCGTGGGGCAGAATCAAGCTGTGGATGCTGTCGCTGAGGCTGTTCTACGATCAAGAGCCGGATTGGGAAGGCCACAACAGCCAACTGGATCTTTCTTGTTCCTGGGTCCAACCGGTGTTGGCAAAACCGAGCTTGCAAAGGCGCTCGCTGAGCAACTTTTTGATGATGAAAACCTCCTGGTGAGGATTGACATGTCTGAATATATGGAACAACACTCAGTTTCACGCCTCATTGGTGCTCCTCCTGGGTATGTTGGACATGAGGAAGGAGGGCAACTCACAGAGGCAGTAAGGCGGAGGCCTTACAGTGTTATTCTGTTTGATGAAGTGGAGAAAGCTCACATCGCTGTCTTCAACACTCTTCTCCAAGTTTTGGACGACGGAAGACTGACTGATGGCCAAGGCCGTACTGTAGATTTTAGAAACACGGTCATTATCATGACTTCAAATCTTGGAGCTGAACATCTCCTTGCTGGATTAATGGGCAAGTGCACGATGCAAGTTGCTCGTGATCGAGTCATGCAAGAGGTGCGGAAACACTTCAGGCCAGAGTTGCTTAATCGTCTTGACGAAATAGTTGTATTTGATCCACTCTCACACGAACAGCTGAGGAAAGTTGCTAGGCTGCAAATGAAAGATGTTGCTGCTCGCCTGGCCGAGAGAGGCGTTGCATTGGCTGTAACCGATGCGGCCCTCGACTATGTCTTAGCAGAGAGCTACGATCCAGTGTACGGTGCTAGACCAATAAGAAGATGGCTGGAGAAAAGGGTAGTGACGGAACTGTCCAGAATGTTGATCAAAGAAGAAATCGATGAGAATTCAACTGTGTACATAGATGCAGCGGCTGATGGGAATAGCTTGGCGTATAGAGTGGAGAAGAACGGTGGTTTTGTTGATGCCGCGACTGGCAAAAAATCTGATGTTTTGATTCAAATCAACAATGTTCCAAGAAGTGATGCTGCTCAGACTGAGGTCTACATAGCTAAAACTTTTGTTTTCTCTTACCATCGATTGATTAGTTATTGA 4665 46.09 MGEEKRHQMMQNLFGDQSEEEEEIDSEHESNPQPNYASDEGEGGAEPEGEGEVEGHGEVEIESEGELQDADPDPGESEGERDQSSQEVDVGHHREEESEGKEVDSDDREEYDQRVVTSRRHDLVESESERSEENHYIDNEDEEVDQTRSPREEEDHNSHPVAEIRDVFGDSDEEEEAEYAVGNEIKQDSARSPMEEEGSFEKSPRPDDIIPDEDARYESDARYESEEENFEVKHKEKPVGPPLELEIPLRPPPARPEKMNMIKVSNIMGIDPKPFDPKTYVEEDIFVTDESGANKRIRLENNIVRWRTVRKPDGTTKYESNARFVRWSDGSLQLLIGNEVLDINVQDAKHDQAHLFLRHGKGILQSQGRLMRKMRFIPSSLTSNSHRLLTALVDSRHKKVYKVKNCITDIDPEREKEEKERAESQTIRANVLLNRKKEKVSKKYAPVIDRRRQLSPGFLEDALEEEDETDYIDSRRSRRRFEEDLEMEARAEKRIMNAKKGTRDIPRKPTFHASKSSGRPVDFSDSDREESEYETEGEDDAPGRVEEPEQEYEEDGEEDDERDEEAEVNEVSDVDEDAEEPKHKVRDYGSSHKRKGIESDEESPPRKVATHRRMAVNPAMSSSFQSSPFSLHKNTMPPPVFFADMNPDKFTHKTNEALAGAHELALNSGHAQLTPLHLAVALVSDPSGILSQAIASSGGENAHKEVETVFKRALKKLPSQSPAPDEVPASTTLIKVIRRAQAAQKSRGDTHLAVDQLVLGLLEDSQIGDLLKEAGVTTAKVKSEVEKLRGKEGKKVESASGDTTFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEDAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPLLMKYRKEKERIDEIRRLKQRREELQIALQEAERRYDLARAADLRYGAIQEVESAIARIEGNTDENLMLTEIVGPEQVAEVVSRWTGIPVTRLGQNDKERLVGLADRLHKRVVGQNQAVDAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVILFDEVEKAHIAVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLAGLMGKCTMQVARDRVMQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAARLAERGVALAVTDAALDYVLAESYDPVYGARPIRRWLEKRVVTELSRMLIKEEIDENSTVYIDAAADGNSLAYRVEKNGGFVDAATGKKSDVLIQINNVPRSDAAQTEVYIAKTFVFSYHRLISY* 1555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18888894 18900678 - Chy12G221080.1 Chy12g01508 239289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01508 1554 Pfam C-terminal, D2-small domain, of ClpB protein 1411 1491 IPR019489 -
Chy12g01508 1554 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1245 1263 IPR001270 GO:0005524
Chy12g01508 1554 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1290 1308 IPR001270 GO:0005524
Chy12g01508 1554 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1352 1366 IPR001270 GO:0005524
Chy12g01508 1554 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 1319 1337 IPR001270 GO:0005524
Chy12g01508 1554 Pfam Leo1-like protein 261 420 IPR007149 GO:0006368|GO:0016570|GO:0016593
Chy12g01508 1554 MobiDBLite consensus disorder prediction 494 510 - -
Chy12g01508 1554 SMART AAA_5 843 988 IPR003593 -
Chy12g01508 1554 SMART AAA_5 1241 1385 IPR003593 -
Chy12g01508 1554 Gene3D - 1194 1410 IPR027417 -
Chy12g01508 1554 SMART ClpB_D2_small_2 1411 1502 IPR019489 -
Chy12g01508 1554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1190 1492 IPR027417 -
Chy12g01508 1554 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 648 1505 - -
Chy12g01508 1554 MobiDBLite consensus disorder prediction 189 241 - -
Chy12g01508 1554 PANTHER ATP-DEPENDENT CLP PROTEASE 648 1505 - -
Chy12g01508 1554 MobiDBLite consensus disorder prediction 494 610 - -
Chy12g01508 1554 Gene3D - 988 1188 IPR027417 -
Chy12g01508 1554 Pfam Clp amino terminal domain, pathogenicity island component 661 706 IPR004176 -
Chy12g01508 1554 Pfam Clp amino terminal domain, pathogenicity island component 740 790 IPR004176 -
Chy12g01508 1554 CDD AAA 826 981 - -
Chy12g01508 1554 Gene3D - 1411 1509 - -
Chy12g01508 1554 Coils Coil 1050 1099 - -
Chy12g01508 1554 Pfam ATPase family associated with various cellular activities (AAA) 848 961 IPR003959 GO:0005524|GO:0016887
Chy12g01508 1554 ProSitePatterns Chaperonins clpA/B signature 1. 939 951 IPR018368 GO:0005524
Chy12g01508 1554 MobiDBLite consensus disorder prediction 49 63 - -
Chy12g01508 1554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 804 1189 IPR027417 -
Chy12g01508 1554 Pfam AAA lid domain 988 1087 IPR041546 -
Chy12g01508 1554 CDD AAA 1215 1410 - -
Chy12g01508 1554 Gene3D - 794 987 IPR027417 -
Chy12g01508 1554 MobiDBLite consensus disorder prediction 576 609 - -
Chy12g01508 1554 Pfam AAA domain (Cdc48 subfamily) 1241 1405 IPR003959 GO:0005524|GO:0016887
Chy12g01508 1554 Gene3D - 647 792 IPR036628 -
Chy12g01508 1554 ProSiteProfiles Clp repeat (R) domain profile. 647 791 IPR004176 -
Chy12g01508 1554 SUPERFAMILY Double Clp-N motif 648 801 IPR036628 -
Chy12g01508 1554 MobiDBLite consensus disorder prediction 1 256 - -
Chy12g01508 1554 MobiDBLite consensus disorder prediction 77 167 - -
Chy12g01508 1554 Coils Coil 897 917 - -
Chy12g01508 1554 MobiDBLite consensus disorder prediction 527 575 - -
Chy12g01508 1554 Coils Coil 1107 1144 - -
Chy12g01508 1554 ProSitePatterns Chaperonins clpA/B signature 2. 1275 1293 IPR028299 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01508 K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB - csv:101221981 1692.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02452 Chy-Chr2:28130558 Chy12g01508 Chy-Chr12:18888894 0 dispersed
Chy06g01564 Chy-Chr6:17630886 Chy12g01508 Chy-Chr12:18888894 0 dispersed
Chy07g00338 Chy-Chr7:2756385 Chy12g01508 Chy-Chr12:18888894 0 dispersed
Chy12g00169 Chy-Chr12:2032926 Chy12g01508 Chy-Chr12:18888894 5.55E-145 dispersed
Chy12g00170 Chy-Chr12:2035748 Chy12g01508 Chy-Chr12:18888894 2.75E-61 dispersed
Chy12g00298 Chy-Chr12:3259697 Chy12g01508 Chy-Chr12:18888894 4.35E-10 dispersed
Chy12g01508 Chy-Chr12:18888894 Chy02g02451 Chy-Chr2:28128836 3.07E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g641 . Blo16g00172 . . . Bpe13g00308 Bma06g00156 . Cmo13g01129 . . . . . . Cpe20g00067 . . . . . . . . . . . . . . . Cone2ag0815 Cone16ag0199 . . Lsi02g00109 . Chy12g01508 Cme12g01953 . . Bda11g01718 . . . . . Sed08g2112 . . Cma13g01081 . Car13g00918 . . . Bhi08g01102 Tan05g2374 Cmetu12g0892 . Hepe07g2474 . . Cla04g01164 Cam04g1222 Cec01g1733 Cco01g1779 Clacu04g1249 Cmu04g1228 Cre01g1524 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63