Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01515 ATGAGTCATTGTGTAGTTCCAAAATGGAATCTGAGCCACGAAAGACAAGAGCAAGTCGAAGAAGAGGGAGAAAAGAGATCTTTTCACGTGCCTGCTGAGAAGAATCAACACAGTACCACCACTAAACCTCTTGTCCCATTCTACCAGCAAATGGCAAAGCAAGGAATTACAGAACTAACCTGGCAAAATGGGCAACTCGCTCTGCATGGGATTGATGGGCTACAGTCAACAATCCCACCAAAGCCCACATGGAACCGAGCCAATGACACGTTGGAGTCCGTAGTCAATCAAGCTAAACTCCAAACTCAAGGCCCAAACTTGATCCAGCAAGGCGAGCCAGTGGTTCATACTGGCCGCACCCTCGCACCCTCTGGCGCGAATGGGAAATGGGTTGAGAGGGGGAACAACCAAGAACCGACGGCGAGAAAAAGAACACGATCAACTTCCGATTATGGTGGGAAAAATGTCAGCACAAGCAACAACAATAACAACAACAACAGCAACACTATGCAAGTCGACCACGGTGATCACAGTGTGTGTGGAAGTGCGAGTGCAGCGTTTTGTAGGGATAATGAGACTACTTTGATGACATGGGCTTCCTTCGATTCTCCTCGAAGCTTGAAAACTAAATCCATCGATGAAGATTCTGCTTGTCATGTTGAATCGGAAAATCAAGAGGAAGAACAAGATACAAAGCGTGTAGCGAATCGTTCTCATTCAGCTAGACGAAGTCGAGCTGCTGCTATACATAATCAATCAGAACGGAGGAGGAGAGACAGAATTAATGAGAAGATGAAAGCCCTGCAGAAGTTGGTGCCAAATGCAAGCAAGACTGATAAAGCTTCAATGTTGGATGAGGTAATTGAATACTTAAAGCAGCTTCAAGCACAAGTTCAGTTCATGAGTGTGAGGAGTATGCAACAGATGATAATGCCTATAGGAATGCAGCAACAACTTCAAATGTCGCTCCTAGCTCGTATGGGCATGGGGGTTGGTCTAGGCATGGGAATGGGGATGCTTGACATGAGTGGAATGGCACGTTCAGCCCAGCAAGCACTTCCTCCACTCATCCATCCTACATCCGTTCCCACTACACCTCCTGCATTTGTTCCGCCACACTTCTTGTTACCCCCTTCAATTCCAAGGCAGGATCCAACACAAGCCAAACCTGCCACCAATGGCTCTGTTGATCCATTTTGTGCCTTTCTAGCACAAACCATGAATATGGATATTTACAACAAAATGGCAGCTTTCTATCGCCAACAAGTTAATCAGACAACAAATGTAATGAGCAGCCCAACACAATCAAACAATATGCAAGGAAATTAA 1329 45.82 MSHCVVPKWNLSHERQEQVEEEGEKRSFHVPAEKNQHSTTTKPLVPFYQQMAKQGITELTWQNGQLALHGIDGLQSTIPPKPTWNRANDTLESVVNQAKLQTQGPNLIQQGEPVVHTGRTLAPSGANGKWVERGNNQEPTARKRTRSTSDYGGKNVSTSNNNNNNNSNTMQVDHGDHSVCGSASAAFCRDNETTLMTWASFDSPRSLKTKSIDEDSACHVESENQEEEQDTKRVANRSHSARRSRAAAIHNQSERRRRDRINEKMKALQKLVPNASKTDKASMLDEVIEYLKQLQAQVQFMSVRSMQQMIMPIGMQQQLQMSLLARMGMGVGLGMGMGMLDMSGMARSAQQALPPLIHPTSVPTTPPAFVPPHFLLPPSIPRQDPTQAKPATNGSVDPFCAFLAQTMNMDIYNKMAAFYRQQVNQTTNVMSSPTQSNNMQGN* 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18950958 18954444 - Chy12G221150.1 Chy12g01515 239296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01515 442 Gene3D - 240 305 IPR036638 GO:0046983
Chy12g01515 442 Pfam Helix-loop-helix DNA-binding domain 250 295 IPR011598 GO:0046983
Chy12g01515 442 SMART finulus 251 300 IPR011598 GO:0046983
Chy12g01515 442 Coils Coil 251 271 - -
Chy12g01515 442 CDD bHLH_AtPIF_like 245 306 - -
Chy12g01515 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 245 294 IPR011598 GO:0046983
Chy12g01515 442 MobiDBLite consensus disorder prediction 150 173 - -
Chy12g01515 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 243 306 IPR036638 GO:0046983
Chy12g01515 442 MobiDBLite consensus disorder prediction 219 257 - -
Chy12g01515 442 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 437 IPR031066 -
Chy12g01515 442 MobiDBLite consensus disorder prediction 219 237 - -
Chy12g01515 442 MobiDBLite consensus disorder prediction 122 173 - -
Chy12g01515 442 PANTHER TRANSCRIPTION FACTOR PIF7 3 437 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01515 - - - csv:101222307 807.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02466 Chy-Chr2:28251000 Chy12g01515 Chy-Chr12:18950958 1.02E-54 dispersed
Chy07g00537 Chy-Chr7:4514649 Chy12g01515 Chy-Chr12:18950958 6.19E-26 dispersed
Chy11g01708 Chy-Chr11:23521379 Chy12g01515 Chy-Chr12:18950958 4.42E-50 dispersed
Chy12g01515 Chy-Chr12:18950958 Chy05g01238 Chy-Chr5:16774374 1.19E-19 dispersed
Chy12g01515 Chy-Chr12:18950958 Chy05g01006 Chy-Chr5:14729633 2.59E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g623 . . . Bda15g00616 . . . Bma12g00978 . . . . Car10g00201 . . . . . . . . . . . . . . . . . . . . . . Lsi02g00102 Csa01g00581 Chy12g01515 Cme12g01961 . Blo15g00325 . . Bpe07g00768 . . . . . . . . . . . Cpe18g00775 Bhi08g01118 . . . . . . Cla04g01172 Cam04g1229 Cec01g1740 Cco01g1786 Clacu04g1256 Cmu04g1235 Cre01g1530 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007472 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18908 PF00010 HLH 1.20E-13 No_clan Chy TF