Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01520 ATGGTTTCAGAGAGAGTAAAGAATGGTGTAAAAGTTGATGATCATCAGTTATTCAGGAACAGTACAAACATGAAGAAGGTTTGTGTAATTGGAGCTGGAGCTTCAGGCTTAGTAGCAGCCAGAGAGCTAAGAAAAGAAGGCCACAAAGTTATCGTTTTCGAGCAAAACGATGACGTGGGTGGCCAATGGTTATACGATCCAAATGTACAAAATGAACATCCTTTAGGAAGATCCAAATTCCTTAATGTTCATAGCAGCATTTATTCTTCTTTAAGGATTGCTTCTCCAAGAGAAATCATGGGTTTCTCTGATTTTCCTTTTGTTGCTAAGAAATTTGGGCATGATTCTAGGAGGTTTCCTGGCCATTATGAGTTGTTTTTGTATTTGAAGGATTTTTGTCGTTGTTTTGATTTGAATCAACTTATAAGGTTTAATACTAGAGTTGAGTATGTGGGAATTATTGATCATAATAAAAACAATATTGTTGCTGGTAATATTCAATGGGTTGTTAGAAGTAGAGATTATAAGTGTAAGTATAAGAACATTAATGGGGATGATGATGATCTGATTGAAGAAGTAGTGGTAGTTGTGGGAAACTCTCAAAGTGGGCAAGACATATCGCTAGATCTAATAGAAGTGGCAAAGGAAATTCATTTAAGCACAAAATTCTTAGACACTGTTACTCAAGGTTTATCCAAAGTCATTCAAAAGTATCAAAACTTGCACCTTCAGCCACAGATTGAATCTCTTGAAGAAGATGGGAGAGTGGTGTTTGTTGATGGATCTTCTATAGTTGCTGATACTATTTTATATTGCACTGGGTATTCATACGCATTTCCATTTCTTGACACGAAAGGAATAGTTGTTGTGGATGATGATCGAGTGGGGCCTTTGTACGAGCATACATTTCCCCCTTCTTTGGCTCCCTCACTTTCATTTATAGGCATTCCACGAAAGCTCATAGGTTTCCCTTTCTTTGAATCACAAGCAATATGGATAGCTCAACTGCTGTCTGGGAAAAGGACATTGCCATCATATGATGATATGATGCAATCCATCAAACAGTTTTATCACTCAAAAGATATTGCTGGCATCCCAAAGCATAACACCCATGATTTAGCTGAATTTGAGTATTGTGACAGGTATGGGGATAACGTCAGATTTCCACATTTGGAGGAATGGAGGAAGAAACTGTGTGTAACAGCTATTATAAATTCCTCAAACAATCTCGAAACGTTTCGAGATTCGATGGATGACGATGAGGATCTTCAAGAGGCCTATCAAAGCCCTCATTTCACTCAACTTGGAGCTCAAGTTTTTCCTTTGGACCACATGTAA 1338 37.74 MVSERVKNGVKVDDHQLFRNSTNMKKVCVIGAGASGLVAARELRKEGHKVIVFEQNDDVGGQWLYDPNVQNEHPLGRSKFLNVHSSIYSSLRIASPREIMGFSDFPFVAKKFGHDSRRFPGHYELFLYLKDFCRCFDLNQLIRFNTRVEYVGIIDHNKNNIVAGNIQWVVRSRDYKCKYKNINGDDDDLIEEVVVVVGNSQSGQDISLDLIEVAKEIHLSTKFLDTVTQGLSKVIQKYQNLHLQPQIESLEEDGRVVFVDGSSIVADTILYCTGYSYAFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFIGIPRKLIGFPFFESQAIWIAQLLSGKRTLPSYDDMMQSIKQFYHSKDIAGIPKHNTHDLAEFEYCDRYGDNVRFPHLEEWRKKLCVTAIINSSNNLETFRDSMDDDEDLQEAYQSPHFTQLGAQVFPLDHM* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18979022 18981801 + Chy12G221200.1 Chy12g01520 239301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01520 445 Gene3D - 213 433 IPR036188 -
Chy12g01520 445 PANTHER FLAVIN-CONTAINING MONOOXYGENASE FMO GS-OX-LIKE 8 186 436 - -
Chy12g01520 445 Gene3D - 24 202 IPR036188 -
Chy12g01520 445 SUPERFAMILY Nucleotide-binding domain 24 352 - -
Chy12g01520 445 PRINTS Flavin-containing monooxygenase (FMO) signature 324 337 IPR000960 GO:0050660|GO:0050661
Chy12g01520 445 PRINTS Flavin-containing monooxygenase (FMO) signature 259 286 IPR000960 GO:0050660|GO:0050661
Chy12g01520 445 PRINTS Flavin-containing monooxygenase (FMO) signature 49 73 IPR000960 GO:0050660|GO:0050661
Chy12g01520 445 PRINTS Flavin-containing monooxygenase (FMO) signature 205 220 IPR000960 GO:0050660|GO:0050661
Chy12g01520 445 PRINTS Flavin-containing monooxygenase (FMO) signature 25 41 IPR000960 GO:0050660|GO:0050661
Chy12g01520 445 PANTHER DIMETHYLANILINE MONOOXYGENASE 20 178 - -
Chy12g01520 445 PANTHER FLAVIN-CONTAINING MONOOXYGENASE FMO GS-OX-LIKE 8 20 178 - -
Chy12g01520 445 Pfam Flavin-binding monooxygenase-like 241 358 IPR020946 GO:0004499|GO:0050660|GO:0050661
Chy12g01520 445 Pfam Flavin-binding monooxygenase-like 25 170 IPR020946 GO:0004499|GO:0050660|GO:0050661
Chy12g01520 445 PANTHER DIMETHYLANILINE MONOOXYGENASE 186 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01520 - - - rcu:8284481 606.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02023 Chy-Chr6:24165995 Chy12g01520 Chy-Chr12:18979022 1.75E-109 dispersed
Chy06g02024 Chy-Chr6:24170294 Chy12g01520 Chy-Chr12:18979022 1.84E-107 dispersed
Chy12g01520 Chy-Chr12:18979022 Chy03g00644 Chy-Chr3:8949442 8.68E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g609 Blo04g00784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00096 . Chy12g01520 Cme12g01966 . . . Bda14g00865 . . Bma03g00842 . Sed08g2095 . . . . . . . . Bhi08g01127 Tan05g2408 Cmetu06g2174 . Hepe07g1737 . . Cla04g01176 Cam04g1233 Cec01g1744 Cco01g1790 Clacu04g1261 Cmu04g1240 Cre01g1534 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009615 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 33