Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy12g01526 | ATGGAAATGGGTCACATTTCATTTGGTTCATTGGTGAAGATCTGCAGGAAGGGAATCGCGTTTTGTGTAGGTTCTGGTTTACCGGTTATGGATTGCAAGGAGCTCAATTTAAACGAAGATTGTGGTGGCTGTGGTAGCGGTGGAAAGAATGGCGGAGATGGGTTTATAGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATCTCCGTGAGTTCAGCTAGGCAGGTCATCGATGCTTTGAATGCGGAGGGACCTGAAATTGATATTATACTGTCGGAAGTTGACCTGCCAATGGCCAAAGGTATGAAAATGTTGAAGTATATCACTCGGGATAAAGAGCTCCGACGCATTCCTGTTATCATGATGTCAACACAAGATGAGGTCCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCTGACTATCTTGTAAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACGCACATGTGGAGAAGAAGACGCACGCTTGGACTGGCGGAAAAAAATATTTTGAATTATGAATTTGATTTGGTGGCATCAGATCCAAGTGATGCTAATACCAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAGTCACGTAGGAGCACCAATCCGGATATGGGAATTACCACGCCTGCAACACATCAAGAAGATGAGCCTGGTATTGCCGCCACACTTGTAGAGCCTCCTGCTGTTCATTCAGTGCAACATCAGCCAGATGTACCTGGAATTAGTGAGCGCCGAACAGGGCAACCTTCATCTTGCCCAAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACCTATGTCAAATCAAGAACTGTGAAAAATAAGGCCGTAGATATTGAAGACAATGCTAAACAACTTTTGCTGGATGAAAATCATCAAGAAACTAGTCAGCGTGCGGTTCGTCTTCCCCCAATACAAGAAATTGGGGAGGCCTTGGAAAGCCATTCACAAGGAGACGAACACCCAAGCAGTACTAGTTTTCCTGATTCTTTTTCTGTGGAGAGATCTTGTACACCACCTGCTGGCACAGAAATTCAAAGGGAAAGAAACATCAATGAAGAAAATTGTTCTCAAGTCCTTATGCACTCTCGAAATGGATCTCAACTTGATATTTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCTTTTTATATGCCAGAAGGTATGATGTCGGCGCAAATGTACCAAAACAACCTGCATGATATGCAAAATCATGCGGCAATGATGTCACAGTATGGTCATTTTCACCATTGCCCTCCCAATGTAAGTGGGGTGGCATCTTATCCTTATTACCCTATGAACATATGTTTACAACCCGGTCAAATGCGAACTACCAGTAATACTCATTCATGGCCATCTCTTGGGAATTCATCTTCCAATGAAGCAAAATCTAACAAATTTGATAGAAGAGAGGCAGCATTGATTAAATTTAGGCAGAAAAGGAAGGAGCGCTGTTTTGACAAAAAGATTAGGTATGTTAATAGGAAACGGCTTGCTGAGAGAAGGCCGCGTGTGCGTGGCCAGTTTGTAAGAAAGGTAAATGGTGTCAACGTAGATCTTAACGGACAGCCTGCATCTGCTGATGATGTTGAGGATGAAGACGAGGAGGAGGAGCTACTATCAAGGGATTCTTCTCATGAGGATGACGGTTCAGGATATTAG | 1758 | 43.17 | MEMGHISFGSLVKICRKGIAFCVGSGLPVMDCKELNLNEDCGGCGSGGKNGGDGFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRTLGLAEKNILNYEFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPDMGITTPATHQEDEPGIAATLVEPPAVHSVQHQPDVPGISERRTGQPSSCPRKSELKIGESSAFFTYVKSRTVKNKAVDIEDNAKQLLLDENHQETSQRAVRLPPIQEIGEALESHSQGDEHPSSTSFPDSFSVERSCTPPAGTEIQRERNINEENCSQVLMHSRNGSQLDISGLPVQTQTAYPFYMPEGMMSAQMYQNNLHDMQNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMRTTSNTHSWPSLGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASADDVEDEDEEEELLSRDSSHEDDGSGY* | 586 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 19020856 | 19025288 | - | Chy12G221260.1 | Chy12g01526 | 239307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy12g01526 | 585 | Pfam | CCT motif | 502 | 544 | IPR010402 | GO:0005515 | |
| Chy12g01526 | 585 | MobiDBLite | consensus disorder prediction | 477 | 497 | - | - | |
| Chy12g01526 | 585 | SMART | REC_2 | 61 | 176 | IPR001789 | GO:0000160 | |
| Chy12g01526 | 585 | MobiDBLite | consensus disorder prediction | 257 | 285 | - | - | |
| Chy12g01526 | 585 | Pfam | Response regulator receiver domain | 63 | 174 | IPR001789 | GO:0000160 | |
| Chy12g01526 | 585 | MobiDBLite | consensus disorder prediction | 349 | 374 | - | - | |
| Chy12g01526 | 585 | ProSiteProfiles | Response regulatory domain profile. | 62 | 180 | IPR001789 | GO:0000160 | |
| Chy12g01526 | 585 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 33 | 561 | IPR045279 | GO:0009736 | |
| Chy12g01526 | 585 | SUPERFAMILY | CheY-like | 59 | 186 | IPR011006 | - | |
| Chy12g01526 | 585 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 | 33 | 561 | - | - | |
| Chy12g01526 | 585 | MobiDBLite | consensus disorder prediction | 549 | 585 | - | - | |
| Chy12g01526 | 585 | MobiDBLite | consensus disorder prediction | 343 | 374 | - | - | |
| Chy12g01526 | 585 | MobiDBLite | consensus disorder prediction | 209 | 243 | - | - | |
| Chy12g01526 | 585 | ProSiteProfiles | CCT domain profile. | 502 | 544 | IPR010402 | GO:0005515 | |
| Chy12g01526 | 585 | MobiDBLite | consensus disorder prediction | 477 | 494 | - | - | |
| Chy12g01526 | 585 | MobiDBLite | consensus disorder prediction | 558 | 574 | - | - | |
| Chy12g01526 | 585 | Gene3D | - | 61 | 262 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy03g01317 | Chy-Chr3:16151628 | Chy12g01526 | Chy-Chr12:19020856 | 3.67E-08 | dispersed | |
| Chy09g01472 | Chy-Chr9:16142628 | Chy12g01526 | Chy-Chr12:19020856 | 1.61E-14 | dispersed | |
| Chy12g01526 | Chy-Chr12:19020856 | Chy03g01687 | Chy-Chr3:18548026 | 5.77E-20 | dispersed | |
| Chy12g01526 | Chy-Chr12:19020856 | Chy02g02099 | Chy-Chr2:25279827 | 3.05E-18 | transposed | |
| Chy12g01526 | Chy-Chr12:19020856 | Chy05g01262 | Chy-Chr5:16978136 | 2.86E-18 | transposed | |
| Chy12g01526 | Chy-Chr12:19020856 | Chy06g00735 | Chy-Chr6:5017383 | 2.22E-18 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 18909 | PF00072 | Response_reg | 8.90E-17 | CL0304 | Chy | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy12g01526 | K12127 | - | csv:101220107 | 1042.34 |