Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01527 ATGTCCAATCGTTTTGTGCCGATTTTGAGTGAGAATGCAACAGCCATTTCCGCCATTGGAAGAAGCTCTAGAGTTAGGCAACAATGTATTTTCTCTGTATTAAAGTCCTGTGTTTCTGTTCGTAATCTTGCAAAAATCCATGCCCAAATAGTTGTCAGCGGTTTTTCCCAGAAAAATTACATCCTCAACCATCTTTTGTCGCTCTATATCTCTTTTGGTTCTCTTGGAAGTGCCCAGAAAGTATTTAAGGACATAACTGCACCGAGTACGACTGTGTGGAACCAGATAATTAAAGGCCATGCGCGGAGCAAAACGTCAAAAGAATCGATTGAGTTGTTCAAACGAATGACATTGGCGGGAGTTGAAGCTAATGGGTTCACGTATTCGTTTCTTTTGAGTGCGTGTGTGAGGTCGAGGTTATTCAGAGAAGGGGAACAGATTCATGGGAGAGTTTTAGTGAATGGGTATTGGTCCAACTTGTATGTTAGAACGAATTTGATCAATTTATATGCAAATGGTGGAGGTGGAGGGGATTTTGATCTTAAGCGTGCGCGTTACTTGTTTGATGAAATGCCTGACTCAAATGTCGTGGGTTGGAATTCCTTGCTTGCAGGGTATGTTAGACGTGGTGATTTTGATGGGGCTAGAAAAGTTTTTGACGAGATGCCTGAAAGGAATGTCCGGACATGGACTATAATGGTTGCAGGGTTTGCTCAAAATGGCCAGTGTAAGCTAGCTTTGTCACTATTTGATCAAATGAGAAGGGCCGGTGTGGAATTGGATCAGGTGGCATTGGTGGCTGCATTGTCAGCTTGTGCTGAATTGGGAGACTTGACATTGGGAAAATGGATTCATGGGTATGTTGAAAGAACATGGCGGAGTAGACACCTCCCAGTATTGGTGTCTTTGAACAATGCTCTGATGCATATGTATGCAAGTTGTGGTGTTATGGATTTAGCATATAAGGTGTTCGAAGAAATGCCTCAACGAAACACTGTGTCTTGGTCGAGCATTATCACTGGATTTGCGAAACAGGGTTGTGGAGTAGAAGCCATTAGAATCTTTCAGTTGATGCTGTGCTCTGGTCAAAATGAAGTCAGACCTGACGAGATCACCTTCATTGGAGCTCTCACTGCTTGCAGTCATGCCGGTTTAATCAGCGACGGTATTCGACTTTTCCAGTCTATGCACAAAACTTTCGGAGTTATCCCGCAGATTGAGCATTATGGATGCATGGTTGATCTCTTGAGCCGTGCAGGCTTACTGACTGAAGCGTTGAGTCTGATTGAAAGCATGCCAATGAAGCCAAACAATGCTGTGTGGGGAGCACTTCTCAGTGGCTGTAGACTTCACAAGAATGACGAGATCTTATCCCATGTTGCAAAACATTTGTCTTTCGAAATCGATCCCAACAATCAAGCTGCTGGATACTTCATGCTCCTAGCTAATGTTTATGCTGCAGACGGTCGTTGGCAAGACACTGCTACCGTCAGACGGAACATGCACGACATAGGAGTGAAGAAACCTTCAGGAAGAAGTTGGATCGAGATTAATGGAGTCTTATGTAGTTTCGTGATGGGGGAAGAAACTCATAAGGATGTGAATTTAATTTACGAAATGCTTGGTAACATAACCAGACAAACCCGGATGGGAGAGCTGCAAATCTAA 1668 43.59 MSNRFVPILSENATAISAIGRSSRVRQQCIFSVLKSCVSVRNLAKIHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFKDITAPSTTVWNQIIKGHARSKTSKESIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGGGGDFDLKRARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALMHMYASCGVMDLAYKVFEEMPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEILSHVAKHLSFEIDPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWIEINGVLCSFVMGEETHKDVNLIYEMLGNITRQTRMGELQI* 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19025878 19027545 - Chy12G221270.1 Chy12g01527 239308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01527 555 Gene3D Tetratricopeptide repeat domain 13 174 IPR011990 GO:0005515
Chy12g01527 555 Pfam PPR repeat family 88 136 IPR002885 -
Chy12g01527 555 Pfam PPR repeat family 195 227 IPR002885 -
Chy12g01527 555 Pfam E motif 451 516 IPR046848 -
Chy12g01527 555 PANTHER OS09G0411600 PROTEIN 21 543 - -
Chy12g01527 555 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 21 543 - -
Chy12g01527 555 Gene3D Tetratricopeptide repeat domain 287 354 IPR011990 GO:0005515
Chy12g01527 555 Gene3D Tetratricopeptide repeat domain 355 541 IPR011990 GO:0005515
Chy12g01527 555 Pfam PPR repeat 408 433 IPR002885 -
Chy12g01527 555 Pfam PPR repeat 305 331 IPR002885 -
Chy12g01527 555 Pfam PPR repeat 333 362 IPR002885 -
Chy12g01527 555 Pfam PPR repeat 229 258 IPR002885 -
Chy12g01527 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Chy12g01527 555 TIGRFAM PPR: pentatricopeptide repeat domain 229 261 IPR002885 -
Chy12g01527 555 TIGRFAM PPR: pentatricopeptide repeat domain 333 362 IPR002885 -
Chy12g01527 555 TIGRFAM PPR: pentatricopeptide repeat domain 199 227 IPR002885 -
Chy12g01527 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Chy12g01527 555 Gene3D Tetratricopeptide repeat domain 176 282 IPR011990 GO:0005515
Chy12g01527 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01527 - - - csv:101220656 1081.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01527 Chy-Chr12:19025878 Chy01g01128 Chy-Chr1:12965027 2.93E-130 dispersed
Chy12g01527 Chy-Chr12:19025878 Chy09g00235 Chy-Chr9:1942857 2.19E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g580 Blo04g00778 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00087 . Chy12g01527 . . . . . . Bpe15g00596 . . . . . . . . . . . Bhi08g01140 . . . Hepe07g2495 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014193 0 1 1 0 1 0 1 1 1 1 0 1 1 0 1 1 1 2 0 0 1 1 1 1 1 0 1 1 1 1 23