Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01529 ATGAACCGGACATTCAATTCATACCCAGATGAAAACTATGCGAATGTTAGGAGATCCATGAGGCAGACTGAGGATGATCATCACAAGAACCTATCGGACAAGGATCCGCACTTTGATTTCAAGAGCAACCATGAATTGAAATTTGGGTTCAGTTCGATTCGAGTAATGGGTATGTTTGTGGTTCTGATGATGTTCATTTCTGTGATATTTTCGGTCTCGGTGGTTTTTAGAGATCCACCGTCGGATGCTGTAATTGAAGGTTCAGATGTGTGGATTCCTCAGTGGAGTTCTGACCCAGTAGATTCTAAGGTTGGAGATCTTCAAGCAGTTGTACAGCCAGTTGATAAGCTGCTTAGTGGCCTTCTTTCTGCCAAACATGTGGTTGGTTCTTGTCTCAGTAGGTACAATTCAGTTGCTTATCAACACAAGCTGGCTTACGAACCCTCTTCTTACTTACTCTCCAAATTGCGGGGTTATGAAGATCTTCATAAGCGTTGTGGAGTTCATACTGAATCTTACAACAAAACTTTGGAGCAGCTTAGGTCTAATGGTAGTAGCAGCTCCTCAGACTGTAAATATCTTCTGTGGATTTCCTTCAGTGGATTAGGGAATAGAATACTAACCCTTGCTTCAGCGTTTCTTTATGCTCTCCTCACAAATCGCGTTCTTCTTGTTGACCCTGGAACTGACATGGCTGATCTTTTCTGTGAACCATTTCCTGAGGTTTCTTGGTTTCTTCCCCAAGATTTCCCATTAAAAGATGACTTCAGTAGTTTCAACCAGAACTCTCCTAATTGCTATGGGAAACTAATGAAGAATAGCATAACGCCAGATTCAAGTGGAATGATCTTGCCATCTGTTGTTTATCTTCATTTGGTCCATGATTACGACGATGATGATAAGCTTTTCTTCTGTGATCAAGACCAAGCTCTTCTGCAGCAATCTCCTTGGCTTGTTATGAAAACAGACAATTATTTTGTCCCATCTCTCTTTTTGATCCCATCATTCGAGAAAGAACTGCATGATCTTTTCCCAAATAAAGATACAGTTTTCCACTGCTTGGGTCGATATCTGTTCCACCCCACAAATTCGGTTTGGGGACTGATTACGAGATATTATCACGCTTACTTGGCTAGAGCTAATGAAAGAATAGGCATTCAGATTAGAGTGTTTGATACAGGAACTGGACCTTTTCAACACATTCTGGATCAGGTTCTGGACTGCACCATGAAAGAGAATCTGTTGCCACAAACGGAGAGGCAAACGTATGCCATTGATCCAGTTAGTAATCAAAAGTCAAAAGCGGTGCTGGTAACTTCCTTGAGCGCTGGTTACTTTGAGAAGTTAAGAGATATTTACTGGGAGAATCCAACAGTAACGGGGGAGATAATTAGTTTCTACCAACCAAGTCATGAAGAACACCAGCAAACTGAAAAAAGTATACATAACCAGAAGGCATTGGCAGAGATGTATTTGTTAAGTACAACTGATGTATTGGTCACCAGTTCATGGTCGACCTTTGGATACGTGGCTCAAGGTCTTGGTGGTCTGAAGCCATGGATATTGTACAAACCCGAAAATCGCACTGCACCAGATCCACCTTGCCGTCGAGCCATGTCCATGGAGCCTTGTTTCCATGCACCTCCTTTCTATGACTGCAAGGCTAAGAAAGGAGTGGACACTGGTAAACTTGTTCCTCATGTGAGGCACTGTGAGGACATGAGCTGGGGACTTAAGTTGGTTGATGATCCATATGATTGA 1761 42.36 MNRTFNSYPDENYANVRRSMRQTEDDHHKNLSDKDPHFDFKSNHELKFGFSSIRVMGMFVVLMMFISVIFSVSVVFRDPPSDAVIEGSDVWIPQWSSDPVDSKVGDLQAVVQPVDKLLSGLLSAKHVVGSCLSRYNSVAYQHKLAYEPSSYLLSKLRGYEDLHKRCGVHTESYNKTLEQLRSNGSSSSSDCKYLLWISFSGLGNRILTLASAFLYALLTNRVLLVDPGTDMADLFCEPFPEVSWFLPQDFPLKDDFSSFNQNSPNCYGKLMKNSITPDSSGMILPSVVYLHLVHDYDDDDKLFFCDQDQALLQQSPWLVMKTDNYFVPSLFLIPSFEKELHDLFPNKDTVFHCLGRYLFHPTNSVWGLITRYYHAYLARANERIGIQIRVFDTGTGPFQHILDQVLDCTMKENLLPQTERQTYAIDPVSNQKSKAVLVTSLSAGYFEKLRDIYWENPTVTGEIISFYQPSHEEHQQTEKSIHNQKALAEMYLLSTTDVLVTSSWSTFGYVAQGLGGLKPWILYKPENRTAPDPPCRRAMSMEPCFHAPPFYDCKAKKGVDTGKLVPHVRHCEDMSWGLKLVDDPYD* 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19032616 19035241 + Chy12G221290.1 Chy12g01529 239310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01529 586 Gene3D - 188 241 - -
Chy12g01529 586 Pfam Xyloglucan fucosyltransferase 104 554 IPR004938 GO:0008107|GO:0016020|GO:0042546
Chy12g01529 586 PANTHER FUCOSYLTRANSFERASE 2-RELATED 31 582 IPR004938 GO:0008107|GO:0016020|GO:0042546
Chy12g01529 586 Gene3D - 368 532 - -
Chy12g01529 586 PANTHER 2-ALPHA-L-FUCOSYLTRANSFERASE, PUTATIVE-RELATED 31 582 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01529 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - csv:101219153 1154.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01059 Chy-Chr7:15537493 Chy12g01529 Chy-Chr12:19032616 1.66E-179 dispersed
Chy10g01025 Chy-Chr10:15563589 Chy12g01529 Chy-Chr12:19032616 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g575 . . . . . . . . Cmo13g01199 . . . . . . Cpe20g00012 . . . . . . . . . . . . . . . Cone2ag0834 Cone16ag0180 . . Lsi02g00086 Csa01g00565 Chy12g01529 Cme12g01977 . . . . . . . . . . . Cma13g01145 . Car13g00974 . . . . . . . . . . Cla04g01186 Cam04g1243 Cec01g1754 Cco01g1800 Clacu04g1271 Cmu04g1250 Cre01g1543 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy10g01025 . 35 565 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 1.2e-154 543.5
Chy12g01529 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 55.4 8.5e-153 537.3
Chy10g01025 . 92 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.5 1.9e-162 569.3
Chy12g01529 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 5.7e-162 567.8
Chy10g01025 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 4.4e-137 485.0
Chy12g01529 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 1.3e-133 473.4
Chy06g01079 . 1 515 Xyloglucan Fucosyltransferase1 AT1G49710 61.8 2.2e-182 635.6
Chy01g00056 . 1 495 Xyloglucan Fucosyltransferase1 AT1G49710 58.8 2.5e-170 595.5
Chy10g01025 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.2e-183 639.0
Chy12g01529 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.7 8.1e-170 594.0
Chy10g01025 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.6 3.3e-200 694.9
Chy12g01529 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.1 5.3e-190 661.0
Chy07g01059 . 13 508 Xyloglucan Fucosyltransferase1 AT2G03220 50.6 1.9e-147 519.6
Chy10g01025 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.4 4.8e-153 538.1
Chy12g01529 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 51.0 8.7e-147 517.3
Chy10g01025 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.3 5.9e-146 514.6
Chy12g01529 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 51.8 1.8e-142 503.1
Chy10g01025 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 52.8 1.1e-147 520.4
Chy12g01529 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 3.8e-145 511.9
Chy06g01079 . 1 515 Xyloglucan Fucosyltransferase1 AT3G19280 63.6 3.5e-185 644.8
Chy01g00056 . 1 495 Xyloglucan Fucosyltransferase1 AT3G19280 58.0 7.4e-167 583.9
Chy10g01025 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.2e-183 639.0
Chy12g01529 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.7 8.1e-170 594.0
Chy10g01025 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.6 3.3e-200 694.9
Chy12g01529 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.1 5.3e-190 661.0
Chy07g01059 . 13 508 Xyloglucan Fucosyltransferase1 AT2G03220 50.6 1.9e-147 519.6
Chy10g01025 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 2.2e-183 639.0
Chy12g01529 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.7 8.1e-170 594.0
Chy10g01025 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 52.8 1.1e-147 520.4
Chy12g01529 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 3.8e-145 511.9
Chy10g01025 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.3 5.9e-146 514.6
Chy12g01529 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 51.8 1.8e-142 503.1
Chy10g01025 . 35 565 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 1.2e-154 543.5
Chy12g01529 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 55.4 8.5e-153 537.3
Chy10g01025 . 92 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.5 1.9e-162 569.3
Chy12g01529 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 5.7e-162 567.8
Chy10g01025 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.7 4.4e-137 485.0
Chy12g01529 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 1.3e-133 473.4
Chy10g01025 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.4 4.8e-153 538.1
Chy12g01529 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 51.0 8.7e-147 517.3
Chy06g01079 . 1 515 Xyloglucan Fucosyltransferase1 AT3G19280 63.6 3.5e-185 644.8
Chy01g00056 . 1 495 Xyloglucan Fucosyltransferase1 AT3G19280 58.0 7.4e-167 583.9
Chy06g01079 . 1 515 Xyloglucan Fucosyltransferase1 AT1G49710 61.8 2.2e-182 635.6
Chy01g00056 . 1 495 Xyloglucan Fucosyltransferase1 AT1G49710 58.8 2.5e-170 595.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012658 0 0 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 29