Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01532 ATGGGATCAGTTAACGTTGGAATATTGGTGATAGGGATCTTTTGTTTTCTGTCTTTGGTTCAAGGAAGAAATGGAGGTGGACGATGGATAACTGACGCTCATGCTACTTTCTATGGCGGCCCCGACGCTTCTGGTACTTCAGGTGGAGCATGTGGATATGGAAGTGGGGTTGATTATGGGACTATAACGACGGCATTGAGTCCAGCGTTGTACGACAATGGGCTAAGCTGTGGTGCTTGTTTCGAGGTTAAATGTATAAATAACCCACAATGGTGCCTTCCCGGCTCCGTCGTTGTCACCGCCACCAACTACTGTCCTCCTGGCGGTTGGTGCGCCCCTTCTCTCCACCATTTTGATCTCTCCCAACCTGCCTTCCAAACCATTGCTAATTTCATTGGTGGGGTCGTTCCTGTTGCCTATCGCAGGGTTAACTGCGGAAGGAGAGGAGGAATAAAGTTTCAAATAAGTGGGAATCCATATTTCAATTTGGTACTGATAAGCAATGTGGGAGGTGCTGGAGATGTTCGTGCTGTTTATATCAAAGGGGGTAAGGGTAGGCCTAATTCTTGGAAGGCAATGACTAGAAATTGGGGTCAAAATTGGCAAAGCGATGACTACCTTGTTGGAAAACCCTTGTCTTTTAAGGTCATTACTGGTGATGGTCGCTCACTTGTGTCTTCCAATGTTGCCCCTCACAATTGGTCATTTGGACAAACCTATATTGGCAGACAGTTCTCTTGA 741 46.69 MGSVNVGILVIGIFCFLSLVQGRNGGGRWITDAHATFYGGPDASGTSGGACGYGSGVDYGTITTALSPALYDNGLSCGACFEVKCINNPQWCLPGSVVVTATNYCPPGGWCAPSLHHFDLSQPAFQTIANFIGGVVPVAYRRVNCGRRGGIKFQISGNPYFNLVLISNVGGAGDVRAVYIKGGKGRPNSWKAMTRNWGQNWQSDDYLVGKPLSFKVITGDGRSLVSSNVAPHNWSFGQTYIGRQFS* 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19055053 19056383 + Chy12G221320.1 Chy12g01532 239313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01532 246 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Chy12g01532 246 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Chy12g01532 246 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Chy12g01532 246 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Chy12g01532 246 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Chy12g01532 246 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Chy12g01532 246 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Chy12g01532 246 PRINTS Expansin signature 149 161 IPR002963 GO:0009664
Chy12g01532 246 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Chy12g01532 246 PRINTS Expansin signature 161 182 IPR002963 GO:0009664
Chy12g01532 246 PRINTS Expansin signature 125 138 IPR002963 GO:0009664
Chy12g01532 246 PRINTS Expansin signature 228 244 IPR002963 GO:0009664
Chy12g01532 246 PRINTS Expansin signature 108 125 IPR002963 GO:0009664
Chy12g01532 246 SUPERFAMILY Barwin-like endoglucanases 29 168 IPR036908 -
Chy12g01532 246 Gene3D - 146 245 IPR036749 -
Chy12g01532 246 SMART dpbb_1 63 140 IPR007112 -
Chy12g01532 246 Pfam Expansin C-terminal domain 151 231 IPR007117 -
Chy12g01532 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 242 IPR007117 -
Chy12g01532 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 150 IPR007112 -
Chy12g01532 246 Gene3D - 20 145 IPR036908 -
Chy12g01532 246 PANTHER EXPANSIN 11 246 - -
Chy12g01532 246 Pfam Lytic transglycolase 63 140 IPR009009 -
Chy12g01532 246 SUPERFAMILY PHL pollen allergen 147 241 IPR036749 -
Chy12g01532 246 PANTHER EXPANSIN-A15 11 246 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01532 Chy-Chr12:19055053 Chy05g00682 Chy-Chr5:8773611 6.17E-97 dispersed
Chy10g01014 Chy-Chr10:15516342 Chy12g01532 Chy-Chr12:19055053 2.04E-104 wgd
Chy12g01532 Chy-Chr12:19055053 Chy02g02491 Chy-Chr2:28417130 4.17E-92 wgd
Chy12g01532 Chy-Chr12:19055053 Chy09g00238 Chy-Chr9:1968941 2.15E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01532 - K20628 csv:101218913 506.138