Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01533 ATGGCAACTGTCATTACCCAGGCTTCTGCCACTGTCTTCCGGCCATGTGCTTCAAGATCGAGGTTTCTCTCGGGGTCCTCGGGAAAGTTTAACAGAGCCTTGTCTGTTAAGCCAACAACTTCTTCAATTCCTAATGCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCGGGTTTGCAATCACCAACTTATCTTGATGGAAGCCTTCCAGGTGACAACGGGTTTGATCCTCTAGGACTTGCAGAGGATCCCGAAAACTTGAGGTGGTATACGCAAGCCGAGCTAGTGAATGGTCGATGGGCGATGCTCGGAGTTGCAGGTATGGTATTGCCTGAAGTCTTGACAAATTATGGAATCATCAATGTACCAAAATGGTACGATGCGGGGAAAGCAGAGTATTTTGCATCGTCATCGACTCTCTTTGTGATTGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGATATAAAGAACCCAGGAAGTGTAAATCAAGATCCAATTTTTAAGCAATACAGCTTGCCACCAAATGATGTTGGATACCCAGGGGGAATTTTCAATCCACTCAACTTTGAACCAACTCTTGAGGCCAAAGAAAAGGAGATTGCTAATGGAAGACTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCACATTTCAGACCCATGGCACAACACAATAGTTCAAACACTAAGGTGA 753 44.22 MATVITQASATVFRPCASRSRFLSGSSGKFNRALSVKPTTSSIPNAFKVEAKKGEWLPGLQSPTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLR* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19057148 19058077 + Chy12G221330.1 Chy12g01533 239314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01533 250 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 249 IPR001344 GO:0009765|GO:0016020
Chy12g01533 250 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Chy12g01533 250 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Chy12g01533 250 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 249 - -
Chy12g01533 250 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02491 Chy12g01533 CCT
Chy02g02491 Chy12g01533 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01543 Chy-Chr3:17608116 Chy12g01533 Chy-Chr12:19057148 1.07E-67 dispersed
Chy09g00695 Chy-Chr9:9241369 Chy12g01533 Chy-Chr12:19057148 2.01E-47 dispersed
Chy10g00781 Chy-Chr10:13858504 Chy12g01533 Chy-Chr12:19057148 9.17E-77 dispersed
Chy12g01533 Chy-Chr12:19057148 Chy09g00113 Chy-Chr9:941941 2.66E-32 dispersed
Chy12g01533 Chy-Chr12:19057148 Chy02g02491 Chy-Chr2:28417130 2.00E-162 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01533 K08910 - csv:101218675 513.072