Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01534 ATGGGAAGGGTTAAGCTGAAAATAAAGAAATTGGAGAGCACTGGTAGCAGGCAAGTGACTTACTCTAAGAGAAGAAATGGGATTATGAAGAAAGCAAGGGAGCTAGCTATACTCTGCGATATTGATATCGTTCTCCTTATGTTTTCGCCAAGTGGAAAGCCGGCGCTATATGAAGGTGAACGCAGCAACATCGAGGAGGTCATTACAAAATTTGCCGAATTGACCCCACAGGAGAGGGCAAAAAGGAAAATGGAAAGCCTTGAAGTGCTAAAGAAAACATTCAAGAAGTTAGACCACGATGTTAACATAGACGATTTTGTGGGTTCAAGCTCTCAAGATTTTGAGGAATTGACCAATGAAGCTTCCTTATTGCGAGATCAGATTGGTGAAACACATAAGAGACTGAGCTATTGGAGGAATCCTGATAGTATCAACAATATAGACCAGCTCCAACAGATGGAAGATCTATTAAGGGAGTCCTTAAACCAGACACGTCTACACAAGGAAAATTTAAGAAGACATCAACTACTCTCACAGGACTTCACAGGCCAGTATACGTGTGCTGGGATGTCCTTACCTTTGTTAATGGACGAAATGCAAGGCACTCAACCCTTGTTATGGCTTCCCAATTATGGCACTCAACAGATTCCTTTACCAAATGAGCCCAACTTTCTGCAACCAGGTGATGTTGAATGCTCATTTCCAAGCTATCCTAGTTTTTTCAACCCTGGGAAGCAAATTGAAGCTGGAATCTCTGGTCAAGTTGATAGCATGCCTCAAGGTGATGGGGCTTTAAATGAATTAAGTGGAACTTCTTGCTCAACGCTGCAACTTGGTGATCAATATCCATACCCTACATGTGATGGTTCAAACTTCCAAGATGAAAAGAGACTGAAAATGGAAATGGAGATGAACTTGCATGCAGCTTGTGTGGATACTCAACTAAATGACAAGTTGGAGCTCTCTAGATCACTATATGATGATAACCAGCATCCTTGGGCTTCTATACCAGGCCCTTGTAGCATTCCAATGTACCAAAGCAATGAATATCACCATGTAGGTTCTCTTTTAACTGGTCCTTCTAAAACTTAG 1092 41.67 MGRVKLKIKKLESTGSRQVTYSKRRNGIMKKARELAILCDIDIVLLMFSPSGKPALYEGERSNIEEVITKFAELTPQERAKRKMESLEVLKKTFKKLDHDVNIDDFVGSSSQDFEELTNEASLLRDQIGETHKRLSYWRNPDSINNIDQLQQMEDLLRESLNQTRLHKENLRRHQLLSQDFTGQYTCAGMSLPLLMDEMQGTQPLLWLPNYGTQQIPLPNEPNFLQPGDVECSFPSYPSFFNPGKQIEAGISGQVDSMPQGDGALNELSGTSCSTLQLGDQYPYPTCDGSNFQDEKRLKMEMEMNLHAACVDTQLNDKLELSRSLYDDNQHPWASIPGPCSIPMYQSNEYHHVGSLLTGPSKT* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19058921 19062037 - Chy12G221340.1 Chy12g01534 239315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01534 363 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Chy12g01534 363 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 352 - -
Chy12g01534 363 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy12g01534 363 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy12g01534 363 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy12g01534 363 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy12g01534 363 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 352 - -
Chy12g01534 363 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy12g01534 363 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Chy12g01534 363 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01534 - - - csv:101220182 729.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01534 Chy-Chr12:19058921 Chy08g00183 Chy-Chr8:4250489 1.03E-18 dispersed
Chy08g00387 Chy-Chr8:9207875 Chy12g01534 Chy-Chr12:19058921 1.79E-27 transposed
Chy10g01013 Chy-Chr10:15512387 Chy12g01534 Chy-Chr12:19058921 4.85E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g565 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00080 Csa01g00558 Chy12g01534 Cme12g01984 . . . . . . . . Sed01g2340 . . . . Car13g00970 . . . Bhi08g01149 Tan05g2432 Cmetu12g1892 . Hepe07g2502 . . Cla04g01191 . . Cco01g1805 Clacu04g1277 . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
Chy12g01534 . 1 257 Type I MADS-box Gene Family AT2G03060 50.9 4.0e-64 242.3
Chy07g01745 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 5.8e-50 194.9
Chy08g01097 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 4.6e-53 205.3
Chy12g00563 . 1 166 Type I MADS-box Gene Family AT5G48670 55.0 2.9e-47 186.0
Chy07g01745 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 3.4e-38 155.6
Chy08g00387 . 1 173 Type I MADS-box Gene Family AT1G77950 59.4 5.8e-51 198.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012582 0 5 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18910 PF00319 SRF-TF 1.20E-19 No_clan Chy TF