Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01534 ATGGGAAGGGTTAAGCTGAAAATAAAGAAATTGGAGAGCACTGGTAGCAGGCAAGTGACTTACTCTAAGAGAAGAAATGGGATTATGAAGAAAGCAAGGGAGCTAGCTATACTCTGCGATATTGATATCGTTCTCCTTATGTTTTCGCCAAGTGGAAAGCCGGCGCTATATGAAGGTGAACGCAGCAACATCGAGGAGGTCATTACAAAATTTGCCGAATTGACCCCACAGGAGAGGGCAAAAAGGAAAATGGAAAGCCTTGAAGTGCTAAAGAAAACATTCAAGAAGTTAGACCACGATGTTAACATAGACGATTTTGTGGGTTCAAGCTCTCAAGATTTTGAGGAATTGACCAATGAAGCTTCCTTATTGCGAGATCAGATTGGTGAAACACATAAGAGACTGAGCTATTGGAGGAATCCTGATAGTATCAACAATATAGACCAGCTCCAACAGATGGAAGATCTATTAAGGGAGTCCTTAAACCAGACACGTCTACACAAGGAAAATTTAAGAAGACATCAACTACTCTCACAGGACTTCACAGGCCAGTATACGTGTGCTGGGATGTCCTTACCTTTGTTAATGGACGAAATGCAAGGCACTCAACCCTTGTTATGGCTTCCCAATTATGGCACTCAACAGATTCCTTTACCAAATGAGCCCAACTTTCTGCAACCAGGTGATGTTGAATGCTCATTTCCAAGCTATCCTAGTTTTTTCAACCCTGGGAAGCAAATTGAAGCTGGAATCTCTGGTCAAGTTGATAGCATGCCTCAAGGTGATGGGGCTTTAAATGAATTAAGTGGAACTTCTTGCTCAACGCTGCAACTTGGTGATCAATATCCATACCCTACATGTGATGGTTCAAACTTCCAAGATGAAAAGAGACTGAAAATGGAAATGGAGATGAACTTGCATGCAGCTTGTGTGGATACTCAACTAAATGACAAGTTGGAGCTCTCTAGATCACTATATGATGATAACCAGCATCCTTGGGCTTCTATACCAGGCCCTTGTAGCATTCCAATGTACCAAAGCAATGAATATCACCATGTAGGTTCTCTTTTAACTGGTCCTTCTAAAACTTAG 1092 41.67 MGRVKLKIKKLESTGSRQVTYSKRRNGIMKKARELAILCDIDIVLLMFSPSGKPALYEGERSNIEEVITKFAELTPQERAKRKMESLEVLKKTFKKLDHDVNIDDFVGSSSQDFEELTNEASLLRDQIGETHKRLSYWRNPDSINNIDQLQQMEDLLRESLNQTRLHKENLRRHQLLSQDFTGQYTCAGMSLPLLMDEMQGTQPLLWLPNYGTQQIPLPNEPNFLQPGDVECSFPSYPSFFNPGKQIEAGISGQVDSMPQGDGALNELSGTSCSTLQLGDQYPYPTCDGSNFQDEKRLKMEMEMNLHAACVDTQLNDKLELSRSLYDDNQHPWASIPGPCSIPMYQSNEYHHVGSLLTGPSKT* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19058921 19062037 - Chy12G221340.1 Chy12g01534 239315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01534 363 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Chy12g01534 363 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 352 - -
Chy12g01534 363 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy12g01534 363 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy12g01534 363 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy12g01534 363 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy12g01534 363 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 352 - -
Chy12g01534 363 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy12g01534 363 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Chy12g01534 363 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01534 Chy-Chr12:19058921 Chy08g00183 Chy-Chr8:4250489 1.03E-18 dispersed
Chy08g00387 Chy-Chr8:9207875 Chy12g01534 Chy-Chr12:19058921 1.79E-27 transposed
Chy10g01013 Chy-Chr10:15512387 Chy12g01534 Chy-Chr12:19058921 4.85E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18910 PF00319 SRF-TF 1.20E-19 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01534 - - csv:101220182 729.554