Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01540 ATGTTCCTTCTAATCCTTTCTTCTGTATTCATTCTACAATCCAACTATAATTCATTCTTCCCCAGTTCGGTACTCAAGTTTATTGTTGTTAATAATACTTCAAATTACCTAAAGCCCAATGTGGAGGATGAACCAATGGAGCTTCCTACACAACCTGGGGAAGCCAAAGAAGCCGTTAGAGATAGGGATGTTGATTATCCAGTTTCTAAATTTGTCGAGGATGAAGTTTCTGTAGAAAATCAGTCAGACTTGGGTTGTGATCCTGCAAAGGCTCGTTTGAGAGTTTTCATGTATGATCTTCCACCTTTATATCACTTTGGATTGTTGGGATGGAAGGGAGAGAAGGATCAAATTTGGCCTAATGTCTGTAATAGAAGTCAAATCCCACCATACCCTGGTGGGTTAAATTTACAGCATAGTATGGAATACTGGCTTACACTTGATCTTTTATCATCGAATGTCCCGGATATGGATCATACTTGCACTGCGGTTAGGGTGAAGGATTCAAGTCAAGCAGATGTCATTTTTGTGCCTTTTTTCTCATCCTTGAGTTACAACCAACATTCTAAGTCACATGGGAAGGAGAAAATCAATGTGAACAAGATATTGCAGCAAAAGTTGATTGATTTTCTGTTTGGTCAGAAGGAGTGGAGGCGAACAGGTGGAAAGAATCATCTCGTAATTGCACATCATCCGAATAGTATGTTGGATGCGAGAAAGAAACTTGGCTCGGCTATGTTTGTGCTTGCAGATTTTGGAAGGTACCCAGCTGCGATTGCAAATATTGAAAAAGATATTATTGCTCCTTACAGACATATAGTGAAGACGGTTCCTAGTTCTAAATCTGCCACATTTGATGAGCGTCCTATTTTGGTGTACTTTCAAGGAGCTATATACAGGAAGGATGGAGGTGTAGTTCGCCAAGAACTATATTACCTTCTGAAAGATGAGGAGGACGTTCATTTTACTTTTGGAAGTGTTAAGGGGAATGGAATCAACAAGGCAGGCCAAGGAATGGCCTCATCCAAGTTCTGCCTCAATATTGCAGGAGACACCCCCTCATCAAATCGACTTTTTGATTCTATTGCAAGTCATTGTGTTCCTGTTATTATAAGTGACGATATTGAGCTGCCATATGAAGATATCTTGGACTACTCAGAGTTTTGTGTCTTTGTTCGAGCAGCAGATTCTACAAGGAAAGGTTATCTACTGAATCTTCTTCGTGGAATTGGACGAGAAAGGTGGACAAAGATGTGGGATAGAATAAAGGAAATCGTGCATGAATTTGAATATCAGTATCCATCTCAAAGTGGTGATGCTGTTGATATGATTTGGCAAGCAGTGTCACGTAAAGTGTCAAAAATAAAATCTAATCGGAATAGGAAGAACAGGTACCATAGATCTCAACTTCTCCTAAAGAACAGTTGA 1428 39.71 MFLLILSSVFILQSNYNSFFPSSVLKFIVVNNTSNYLKPNVEDEPMELPTQPGEAKEAVRDRDVDYPVSKFVEDEVSVENQSDLGCDPAKARLRVFMYDLPPLYHFGLLGWKGEKDQIWPNVCNRSQIPPYPGGLNLQHSMEYWLTLDLLSSNVPDMDHTCTAVRVKDSSQADVIFVPFFSSLSYNQHSKSHGKEKINVNKILQQKLIDFLFGQKEWRRTGGKNHLVIAHHPNSMLDARKKLGSAMFVLADFGRYPAAIANIEKDIIAPYRHIVKTVPSSKSATFDERPILVYFQGAIYRKDGGVVRQELYYLLKDEEDVHFTFGSVKGNGINKAGQGMASSKFCLNIAGDTPSSNRLFDSIASHCVPVIISDDIELPYEDILDYSEFCVFVRAADSTRKGYLLNLLRGIGRERWTKMWDRIKEIVHEFEYQYPSQSGDAVDMIWQAVSRKVSKIKSNRNRKNRYHRSQLLLKNS* 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19097729 19099923 - Chy12G221400.1 Chy12g01540 239321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01540 475 Pfam Exostosin family 90 405 IPR040911 -
Chy12g01540 475 PANTHER EXOSTOSIN FAMILY-LIKE PROTEIN 1 464 - -
Chy12g01540 475 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 1 464 IPR004263 GO:0006486|GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01540 - - - csv:101219466 949.888
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g00522 Chy-Chr12:7132439 Chy12g01540 Chy-Chr12:19097729 7.32E-72 dispersed
Chy12g01540 Chy-Chr12:19097729 Chy02g01889 Chy-Chr2:21752219 1.65E-18 dispersed
Chy04g01127 Chy-Chr4:17398451 Chy12g01540 Chy-Chr12:19097729 7.29E-11 transposed
Chy06g02020 Chy-Chr6:24151191 Chy12g01540 Chy-Chr12:19097729 1.12E-07 transposed
Chy12g01540 Chy-Chr12:19097729 Chy03g00680 Chy-Chr3:9360550 5.23E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g553 . . . . . Bpe13g00294 Bma06g00171 . Cmo13g01186 . . . . . . Cpe20g00018 . . . . . . . . . . . . . . . . Cone16ag0169 . . Lsi02g00073 Csa01g00550 Chy12g01540 Cme12g01992 . . Bda11g01702 . . . . . Sed08g2069 . . Cma13g01133 . Car13g00965 . . . Bhi08g01166 Tan05g2441 Cmetu12g0527 Lac10g0078 Hepe07g2508 . . Cla04g01198 Cam04g1257 Cec01g1768 Cco01g1815 Clacu04g1287 Cmu04g1263 Cre01g1556 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008229 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35