Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01543 ATGAATAGCAGAGAGCTTCACTGTCTTGCGTTATTTAGCAAATGTAAATCTCTTAGAACTGTTAAGCAAATCCAGGCTTTTATATTCAAAACAGGCTTAAATTCCGATCCATTGGTCTCCGGAAAGCTTCTTCTACATTGTGCAGTCACACTTCCTGATTCTCTACACTATGCTCGACGCCTTTTCCTCGACATTCGAAACCCAGATGTGTTTATGTACAACACTCTCATCCGTGGCCTTTCCGATTCCGACACTCCCTCCAATGCCCTTCAACTGTTTGTTGAAATGCGTCGCAAATCCGTGGCTTTACCCGATAGTTTCTCTTTTGCTTTTCTACTCAAAGCCGCCGCTAATTGCAGGGCTCTGACCAATGGGTTGCAGTTGCATTGCCTAGCTGTTGGTTATGGCATGGATTCCCATCTTTTTATTGGGACAACGCTGATTAGCATGTATGCTGAATGTGCAAGTTTGGCCTTTGCACGCAAGGTGTTCGATGAAATGATTGAACCAAATATTGTTGCTTGGAATGCCATTGTTGCTGCGTGTTTTAGGTGCGAGGGCGTTAAGGATGCAGAGCAAGTGTTTCGTTGTATGCCAATTAGAAACTTGACCTCTTGGAACATCATGCTTGCAGGGTACACAAAAGCAGGTGAGCTTCAGTTAGCTAGGGAGGTGTTTATGAAAATGACTTTGAAAGATGATGTTTCTTGGAGTACTATGATTGTTGGGTTCGCTCATAATGGCAACTTTAACGATGCTTTCGCATTTTTCAGGGAGGTAAGGCGGGAAGGGATGAGACCAAATGAGGTAAGTCTCACAGGTGTGCTTTCTGCATGTGCACAAGCTGGGGCATTCGAGTTTGGAAGAATCCTACATGGGTTTGTTGAAAAATCTGGCTTTCTGCAGATTATTTCAGTGAATAACGCACTGATTGATACCTACTCTAAATGTGGGAATTTGGATATGGCTCGTTTGGTCTTTGATAATATGCTTAGAAGGAGCGCCGTCTCTTGGACAGCCATGATTGCGGGGATGGCAATGCATGGCTACGGGGAAGAAGCAATCAGACTATTTAATGAGATGGAAGAGTCTAATATTAAGCCCGACAGTATTACCTTCATATCCATCTTGTATGCTTGTAGCCATGCTGGATTAGTTGATTTGGGATGCTCTTATTTTTCTAGGATGGTAAATACTTACGGTATTGAACCCGTAATTGAACATTATGGTTGCATGGTTGATCTTTATGGTCGAGCTGGTAAGCTGCAGCAAGCTTATGACTTTGTGTGTCAAATGCCAATTTCACCGAATGATATTGTCTGGAGGACTCTTCTTGGAGCTTGTAGCATTCATGGTGACTTAGATCTGGCAGGGCAAGTAAAGAGACAACTCTCTGAACTTGACCCTGAAAATTCTGGAGATCATGTACTTTTGTCAAACATTTATGCAGTTGCAGGAAAATGGAAGGATGTTGCCTCTTTAAGAAGATCAATGACTCATCAAAGACTCAAGAAAACTCCAGGTTGGAGCATGATTGAAGTCAACAGAATTATGTATAGTTTTGTTGCAGGAGAAAAGCAAAATGACATAGCAGTAGAGGCTCATAAAAAACTAAGGGAGATAATGTCGAGACTAAGGATAGAAGGAGGTTATGTTCCAGAAGTTGGAAGTGTTTTGCATGATATAGAAGTAGAAGAAAAGGAAGACTCTGTTTCACAACACAGCGAGAAACTGGCAGTAGCTTTCGGGATGGCGAAGCTGCCAAGAGGAAGAGCCATAAGAGTGGTTAAGAATTTAAGAATTTGCAGGGACTGTCACACTGTAATGAATCTGATTTCTAAGGTCTATGAAGTAGAAATTGTGGTGAGAGATAGAAGCCGTTTCCACTCATTCACACATGGTTCTTGTTCGTGCAGAGATTATTGGTAA 1929 42.15 MNSRELHCLALFSKCKSLRTVKQIQAFIFKTGLNSDPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAVGYGMDSHLFIGTTLISMYAECASLAFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMTLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGDLDLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVASLRRSMTHQRLKKTPGWSMIEVNRIMYSFVAGEKQNDIAVEAHKKLREIMSRLRIEGGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVMNLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW* 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19131760 19133688 - Chy12G221430.1 Chy12g01543 239324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01543 642 Pfam DYW family of nucleic acid deaminases 550 642 IPR032867 GO:0008270
Chy12g01543 642 PANTHER OS01G0913400 PROTEIN-RELATED 11 583 - -
Chy12g01543 642 PANTHER - 11 583 - -
Chy12g01543 642 Gene3D Tetratricopeptide repeat domain 145 298 IPR011990 GO:0005515
Chy12g01543 642 Gene3D Tetratricopeptide repeat domain 305 574 IPR011990 GO:0005515
Chy12g01543 642 Gene3D Tetratricopeptide repeat domain 42 140 IPR011990 GO:0005515
Chy12g01543 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 232 IPR002885 -
Chy12g01543 642 Pfam E motif 451 513 IPR046848 -
Chy12g01543 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Chy12g01543 642 Pfam PPR repeat 173 199 IPR002885 -
Chy12g01543 642 Pfam PPR repeat 205 230 IPR002885 -
Chy12g01543 642 Pfam PPR repeat 408 432 IPR002885 -
Chy12g01543 642 Pfam PPR repeat 145 169 IPR002885 -
Chy12g01543 642 Pfam PPR repeat 308 333 IPR002885 -
Chy12g01543 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Chy12g01543 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Chy12g01543 642 Pfam PPR repeat family 232 280 IPR002885 -
Chy12g01543 642 Pfam PPR repeat family 334 380 IPR002885 -
Chy12g01543 642 Pfam PPR repeat family 68 117 IPR002885 -
Chy12g01543 642 TIGRFAM PPR: pentatricopeptide repeat domain 235 269 IPR002885 -
Chy12g01543 642 TIGRFAM PPR: pentatricopeptide repeat domain 205 229 IPR002885 -
Chy12g01543 642 TIGRFAM PPR: pentatricopeptide repeat domain 72 102 IPR002885 -
Chy12g01543 642 TIGRFAM PPR: pentatricopeptide repeat domain 308 333 IPR002885 -
Chy12g01543 642 TIGRFAM PPR: pentatricopeptide repeat domain 336 370 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01543 - - - csv:101219230 1257.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00235 Chy-Chr9:1942857 Chy12g01543 Chy-Chr12:19131760 4.22E-139 dispersed
Chy12g01543 Chy-Chr12:19131760 Chy02g01976 Chy-Chr2:23518489 9.82E-179 dispersed
Chy12g01543 Chy-Chr12:19131760 Chy02g02617 Chy-Chr2:29331420 2.53E-170 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g549 . . . . . . . . Cmo13g01185 . . . . . . . . . . . . . . . . . . . . . . Cone2ag0848 . . . Lsi02g00070 Csa01g00546 Chy12g01543 Cme12g01996 . . . . . . Bma03g00827 . . . . Cma13g01131 . . . . . Bhi08g01172 . . . Hepe07g2512 . . Cla04g01201 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010028 0 6 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 29