Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01545 ATGACAGAGGAAAACAAAGTGGTGCTTTATGGATTGTGGGCTAGTCCTTTTGTAAAGAGGGTCGAACTCGCCCTTAAAATCAAAGGCATCCCTTTTGAATATGTAGAAGAAGATTTCCTGAACAAAAGCCCAGAGCTTCTCAAATTCAATCCTGTTTACAAGAAAGTTCCTGTACTCGTCCACAATGGAAGACCCATTTGCGAATCAGCTATAATTTTTGAGTACATAGAGGAAGTTTGGAACAACAACGGCCCTCCTCTTCTACCTCAAGATCCCTACAAACGATCCCAGATTCGATTCTGGGCTGATTTCGTTCAGAATCAGTTGTTTGATGGTCTACTTTTAGCAATGAAGACAGAAGGGGAAGCACAAGAGAAAGCCATAAAAGAAGTGAAAGAGAAGCTGAAAGTTATCGAAGAACAGGGGTTGAAGAGTTTGTTGGCAGAGGGAAGTCCATTTGTAAATGGAGATGAACTTGGATATTTAGACATAGGGATGTTGACAGTTCTTGGAAGGTACAAGATTTATGAAGAGTTTTTTGGAATGAAAATTATGGAAGAAGAGGAGATCCCAATTGTATTCTCGTGGTTGAATAGAATGATAGAGCACCCTATTGCAAAGGAGGGAACTCCTCCCAAGGAAAAAGTTTTGGGGCTTCTTCACATCGTTAGGGGAAGATTTCTACAATCCCCTGTTGCTGCTTAA 705 40.85 MTEENKVVLYGLWASPFVKRVELALKIKGIPFEYVEEDFLNKSPELLKFNPVYKKVPVLVHNGRPICESAIIFEYIEEVWNNNGPPLLPQDPYKRSQIRFWADFVQNQLFDGLLLAMKTEGEAQEKAIKEVKEKLKVIEEQGLKSLLAEGSPFVNGDELGYLDIGMLTVLGRYKIYEEFFGMKIMEEEEIPIVFSWLNRMIEHPIAKEGTPPKEKVLGLLHIVRGRFLQSPVAA* 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19134693 19135503 - Chy12G221450.1 Chy12g01545 239326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01545 234 ProSiteProfiles Glutaredoxin domain profile. 1 95 - -
Chy12g01545 234 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 229 IPR045073 -
Chy12g01545 234 Gene3D - 88 229 - -
Chy12g01545 234 Pfam Glutathione S-transferase, C-terminal domain 115 204 IPR004046 -
Chy12g01545 234 Gene3D Glutaredoxin 1 87 - -
Chy12g01545 234 PANTHER GLUTATHIONE S-TRANSFERASE 1 229 - -
Chy12g01545 234 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Chy12g01545 234 CDD GST_C_Tau 92 220 IPR045074 GO:0004364|GO:0006749
Chy12g01545 234 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 219 IPR010987 -
Chy12g01545 234 Pfam Glutathione S-transferase, N-terminal domain 7 77 IPR004045 -
Chy12g01545 234 SFLD Glutathione Transferase (cytosolic) 3 228 IPR040079 -
Chy12g01545 234 SFLD Main.3: Omega- and Tau-like 3 228 IPR045073 -
Chy12g01545 234 CDD GST_N_Tau 7 80 - -
Chy12g01545 234 SUPERFAMILY GST C-terminal domain-like 78 226 IPR036282 -
Chy12g01545 234 SUPERFAMILY Thioredoxin-like 5 109 IPR036249 -
Chy12g01545 234 Coils Coil 121 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01545 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101203519 448.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01545 Chy-Chr12:19134693 Chy08g00685 Chy-Chr8:14682160 1.31E-53 dispersed
Chy12g01544 Chy-Chr12:19134044 Chy12g01545 Chy-Chr12:19134693 6.74E-33 tandem
Chy12g01545 Chy-Chr12:19134693 Chy12g01546 Chy-Chr12:19136634 2.20E-140 tandem
Chy10g00997 Chy-Chr10:15434043 Chy12g01545 Chy-Chr12:19134693 2.69E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g547 . . . . . . . . Cmo13g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00544 Chy12g01545 . . . . Bda14g00849 . . Bma03g00824 . Sed08g2065 . . Cma13g01129 . . . . . Bhi08g01175 Tan05g2447 Cmetu10g1222 Lac10g0073 Hepe07g2513 . . Cla04g01202 Cam04g1264 Cec01g1774 Cco01g1822 Clacu04g1293 Cmu04g1269 Cre01g1562 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001282 1 2 2 3 1 3 0 4 4 3 1 4 2 5 2 1 4 1 1 2 3 3 1 6 4 1 2 3 2 4 75