Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01549 ATGAATTTTATCGCAATTCAAAACTTTGTTAACAAAACGCTGATATCCCCACGTAGATTGGTTTCCTCTGTCGCGACTGTGGACAATGTGTCCAATTTTTCCTTCACCAAAATTGAAACTTTCGCTCCTTTCAATCCTGTTCAGTTGCTTAATGATTTTGTTAAATTGGGAAAATTCTCTTTGAGAAACACGAAAGTTCTACACGCTAAGTTCCTCCGAGAAACTCTTCGTTTCGATATCTATGTTTCAAATTCTTTGCTACATTTGTACTCAAAGTCTAACGCTATGGACCATGCAATCAAACTTTTTGATACAATCCTATACCCAAATGTTATTTCTTGGAATACCATTATCACGGGTTTCAACAACAATTTCTTACATTTGGACTCGTTGAGAACATTTTGCTGGATGCATTTCCTGGGTTTTAAACCTAATGAGGTAACATGTGGGAGTGTTTTATCTGCTTGTGCTGCCATTCAAGCCACAATGTTTGGCAAGCAGGTTTATTCACTTGCTGTGAGAAATGGGTTCTTTGATAACGGTTATGTTCGAACCGTAATGATTGATTTATTTGCAAAAGATTCTAAATTTTTGGATGCTCTAAGGGTGTTTCATGATGTTGATTGTGCGAATGTGGTGTGTTGGAATGCTATTGTCTCTGCAGCGGTAACAAATGGGGACAATTTGATGGCTTTGGATCTTTTCAACAGAATGTGTAGTAAATTTCTGGAGCCTAATAGTTTCACCTTTTCTAGTGTTCTAACTGCGTGTTCTGCACTTCAAGATCTTGAATTTGGGAAAAAGGTTCAAGGGAGAGTGATTAAATGTGGTGGAGGAGACGTTTTTGTTGAGACAGCCCTTGTTAGTTTGTACGCCAAGTGTGGAGACATGGATGAGGCTGTTAAGACATTCTTGCAGATGCCCATTCGCAATGTGGTCTCGTGGACAGTTATAATATCTGGCTTTGTGCAAAATAATGACTATTTAATGGTCATCAAGTTTTTTGAAGATTTGAGAAAAGTAGGAGAGGAAATTAATAGCTACACAGTTACTACCCTGTTAAGGGCATGTGCTAATCCAGCCATGAGAAAAGGGGCAACCCAACTTCACTCCTGGATTCTAAAAGCTGGTTTTTCTTCACATGCAGAGGTGGTGGCTGCTTTAATTATTATGTATTCAAAAATAGGAGCAGTTGATCTTTCATTGATGGTTTTTAGAGAGATGGATAACCATAGGAATCTCAGTTCTTGGACAGCCATGATATTGTCGTTTGCAAAAAATAATGATAAAGAGGAAGCAAGTGATTTGTTCCGAAAAATGTTAAGGGAAAGAATGGGACCAGATTCAGTATGTACTTCCGCCCTCTTGAGTTTGACTGACTGTATTACTTTTGGGAGGCAGATACACTGCTACGCACTTAAAACTGAATTAATATTTAATGTTCATGTTGGGAGTTCTCTTCTTACAATGTATTCTAAATGTGGCCATCTAAAGGAAGCTTTTCAAGTTTTTGAAAACATGCCAGAGAAAGACAATGTTTCCTGGACCTTAATGATTTCCTGCTTCTCAGAACATGGCTATGCAAAAGACGCCATTCAATTATTTAGAGAAATGTTGTTAGAATGTTTACCTGATGGTACGTCTTTGAGTGCAGTCCTAACTGCATGCTACGCCATTCCTTCTATTCAATTAGGTAGAGAAATTCATGGTTACTCAGTTCGTGTGGGACTTAGCGAAAACGTAGCTTTGGGAAGTTCGCTTGTGACTATGTACTCAAAATGTGGTAGCCTGGCATTGGCTAGGAGGGTGTTTGAAACATTGCCCCAGAAAGATGATATTGTGTGTTCTTCATTGGTTGCAGGATATGCTCAACAAAAGTGCATCAAAGAGGCTCTTTTGCTATTTCGCAGTCTACTAGTGGCTGGCTTAGCCATCGATCCCTTCTCAATCTCATCCATATTGGGAGCTATTGCCCTTTTAAATAGGCCTGCAATTGGGACTCAAATCCATGCACTCATTGTGAAAGTAGGCTTGGAGAAAGATGTATCTGTTGGGAGTTCGCTAGTAATGGTATACTCCAGATGTGGAAGTATAGAAGACTGCTGCAAAGCATTTGGGCAGATTGGAAAGCCCGATTTGATAGGTTGGACATCCATGATTGTCAGTTATGCCCAGCATGGGAAAGGTGCTGAAGCTTTATGTGCCTATGAACTTATGAAGAAAGAAGGATTCAAGCCTGATCCAGTCACCTTTGTTGGGGTTTTGTCTGCTTGTAGCCATAATGGTTTGGTCGATGAAGCCTATTTCCACCTCAATTCAATGGTGGAAGAATATGGTATACAACCAGGATATCGACATTATGTATGTATGGTAGATCTTCTTGGCCGGTGTGGGAAACTGAAAGAGGCGGAAGAACTGATTAACCATATGCCTATTGAACCTGACGCTCTCATTTGGGGAACACTTCTTGCTGCTTGTAAAGTACATGGAGATATTGAACTTGGAAAACTAGCAGCAAGAAAGGTGATGGAGTTAAACCCAGGTGATACTGGTGCGTATGTCTCCCTTTCAAACATCTGTGCTGATATGGGATTGTGGGAAGAGGTCCTGAACAACATCATAGGTCAGGAAGTTGGTAAAAGTGTGATAAATGAGTATTTGCAGCTCCGAGGTCATTCTGACCTCTGCAGCAAAACGTTGGATGTTCCAACTTCAACCTTATATACCTATGTCAAGCCACCCTCCCATGAAGGTTCTTTTGGCGGATCCAAGAAACCTGTTAAAACACCAAAAACCATTTCTATCTCCAGTAAAGAGATAGAACCAAAGAAGGGTACTAGCACTAGTAACGTGGAAAGCCAGGTTTCATCAGATACTCGCAATTCATCATCTGGCAAAGGGAATCAAAGTTCTTCTAGAAAGAAGAAGGCTACCAAAGTTGTTTCTCTGGCTGAAGCTGCCAAAGGATCAATTGTGTTCCAGCAAGGAAAACCATGTTCATGCCAAGCTCGTCGTCATAGACTGGTGAGCAATTGTCTATCATGTGGCAAGATTGTATGTGAACAAGAGGGAGAAGGCCCATGCAGTTTTTGTGGATCCCTTGTGCTGAGAGAAGGGAGCACGTATGCTGGTATGGATGAAGGTTTTACCCCACTTTCAGATGCTGAAGCAGCAGCTGAAGCTTATGCAAAAAGGTTAGTTGAATATGACAGAAACTCTGCTGCAAGAACATCCGTAATCGATGATCAAAGTGATTATTACCAGATTGAGGGCAATAGCTGGTTGTCTAATGAGGAAAAGGAGCTTCTGAGAAAGAAACAAGAGGAGATTGAAGAGGCTGAACGAGCTAAACGAAACAAAGTGGTTGTAACCTTTGACTTGGTTGGCCGCAAGGTTCTTTTGAATGAAGATGATTCTTCTGAACTTGAATCACACACCAATATCATGCGGCCAGCAGATGAAAGAGAAGTGAACAGAATTAAACCAAATCCATCTCTTCAAATACATCCTGTCTTTTTAGATCCAGGCCCCAGAGAGAAATCCACCAAAGACAGAAACTCGAACAAAGCCGTTAGCAAAAAAGGCATTTGTCTGGAAATTACTGGAAGGGTGCAGCATGATAGCAATGAATTGAAGCATTTTATGATGGAAAGTGTTGGAAACGTCATTCAATAG 3675 40.65 MNFIAIQNFVNKTLISPRRLVSSVATVDNVSNFSFTKIETFAPFNPVQLLNDFVKLGKFSLRNTKVLHAKFLRETLRFDIYVSNSLLHLYSKSNAMDHAIKLFDTILYPNVISWNTIITGFNNNFLHLDSLRTFCWMHFLGFKPNEVTCGSVLSACAAIQATMFGKQVYSLAVRNGFFDNGYVRTVMIDLFAKDSKFLDALRVFHDVDCANVVCWNAIVSAAVTNGDNLMALDLFNRMCSKFLEPNSFTFSSVLTACSALQDLEFGKKVQGRVIKCGGGDVFVETALVSLYAKCGDMDEAVKTFLQMPIRNVVSWTVIISGFVQNNDYLMVIKFFEDLRKVGEEINSYTVTTLLRACANPAMRKGATQLHSWILKAGFSSHAEVVAALIIMYSKIGAVDLSLMVFREMDNHRNLSSWTAMILSFAKNNDKEEASDLFRKMLRERMGPDSVCTSALLSLTDCITFGRQIHCYALKTELIFNVHVGSSLLTMYSKCGHLKEAFQVFENMPEKDNVSWTLMISCFSEHGYAKDAIQLFREMLLECLPDGTSLSAVLTACYAIPSIQLGREIHGYSVRVGLSENVALGSSLVTMYSKCGSLALARRVFETLPQKDDIVCSSLVAGYAQQKCIKEALLLFRSLLVAGLAIDPFSISSILGAIALLNRPAIGTQIHALIVKVGLEKDVSVGSSLVMVYSRCGSIEDCCKAFGQIGKPDLIGWTSMIVSYAQHGKGAEALCAYELMKKEGFKPDPVTFVGVLSACSHNGLVDEAYFHLNSMVEEYGIQPGYRHYVCMVDLLGRCGKLKEAEELINHMPIEPDALIWGTLLAACKVHGDIELGKLAARKVMELNPGDTGAYVSLSNICADMGLWEEVLNNIIGQEVGKSVINEYLQLRGHSDLCSKTLDVPTSTLYTYVKPPSHEGSFGGSKKPVKTPKTISISSKEIEPKKGTSTSNVESQVSSDTRNSSSGKGNQSSSRKKKATKVVSLAEAAKGSIVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCSFCGSLVLREGSTYAGMDEGFTPLSDAEAAAEAYAKRLVEYDRNSAARTSVIDDQSDYYQIEGNSWLSNEEKELLRKKQEEIEEAERAKRNKVVVTFDLVGRKVLLNEDDSSELESHTNIMRPADEREVNRIKPNPSLQIHPVFLDPGPREKSTKDRNSNKAVSKKGICLEITGRVQHDSNELKHFMMESVGNVIQ* 1225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19144764 19149865 + Chy12G221490.1 Chy12g01549 239330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01549 1224 MobiDBLite consensus disorder prediction 929 977 - -
Chy12g01549 1224 PANTHER OS09G0413300 PROTEIN 562 679 - -
Chy12g01549 1224 PANTHER OS09G0413300 PROTEIN 366 457 - -
Chy12g01549 1224 PANTHER OS07G0578800 PROTEIN-RELATED 366 457 IPR045215 GO:0003723|GO:0009451
Chy12g01549 1224 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 747 782 IPR002885 -
Chy12g01549 1224 PANTHER OS07G0578800 PROTEIN-RELATED 679 870 IPR045215 GO:0003723|GO:0009451
Chy12g01549 1224 PANTHER OS07G0578800 PROTEIN-RELATED 562 679 IPR045215 GO:0003723|GO:0009451
Chy12g01549 1224 PANTHER OS07G0578800 PROTEIN-RELATED 112 364 IPR045215 GO:0003723|GO:0009451
Chy12g01549 1224 SUPERFAMILY TPR-like 515 870 IPR011990 GO:0005515
Chy12g01549 1224 Pfam PPR repeat 485 510 IPR002885 -
Chy12g01549 1224 Pfam PPR repeat 416 443 IPR002885 -
Chy12g01549 1224 Pfam PPR repeat 614 642 IPR002885 -
Chy12g01549 1224 Pfam PPR repeat 84 104 IPR002885 -
Chy12g01549 1224 Pfam PPR repeat 513 539 IPR002885 -
Chy12g01549 1224 Pfam PPR repeat 786 810 IPR002885 -
Chy12g01549 1224 PANTHER OS09G0413300 PROTEIN 679 870 - -
Chy12g01549 1224 PANTHER OS09G0413300 PROTEIN 112 364 - -
Chy12g01549 1224 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Chy12g01549 1224 Gene3D Tetratricopeptide repeat domain 364 466 IPR011990 GO:0005515
Chy12g01549 1224 Pfam PPR repeat family 211 257 IPR002885 -
Chy12g01549 1224 Pfam PPR repeat family 711 759 IPR002885 -
Chy12g01549 1224 Pfam PPR repeat family 310 359 IPR002885 -
Chy12g01549 1224 Pfam Putative zinc finger motif, C2HC5-type 997 1037 IPR009349 GO:0005634|GO:0006355|GO:0008270
Chy12g01549 1224 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Chy12g01549 1224 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 510 IPR002885 -
Chy12g01549 1224 Pfam E motif 829 869 IPR046848 -
Chy12g01549 1224 MobiDBLite consensus disorder prediction 1166 1191 - -
Chy12g01549 1224 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 712 746 IPR002885 -
Chy12g01549 1224 TIGRFAM PPR: pentatricopeptide repeat domain 416 448 IPR002885 -
Chy12g01549 1224 TIGRFAM PPR: pentatricopeptide repeat domain 513 539 IPR002885 -
Chy12g01549 1224 TIGRFAM PPR: pentatricopeptide repeat domain 716 747 IPR002885 -
Chy12g01549 1224 Coils Coil 1096 1123 - -
Chy12g01549 1224 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Chy12g01549 1224 PANTHER OS07G0578800 PROTEIN-RELATED 461 577 IPR045215 GO:0003723|GO:0009451
Chy12g01549 1224 MobiDBLite consensus disorder prediction 916 977 - -
Chy12g01549 1224 Gene3D Tetratricopeptide repeat domain 730 893 IPR011990 GO:0005515
Chy12g01549 1224 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Chy12g01549 1224 PANTHER OS09G0413300 PROTEIN 461 577 - -
Chy12g01549 1224 PANTHER OS07G0578800 PROTEIN-RELATED 61 121 IPR045215 GO:0003723|GO:0009451
Chy12g01549 1224 MobiDBLite consensus disorder prediction 1176 1190 - -
Chy12g01549 1224 Gene3D Tetratricopeptide repeat domain 468 562 IPR011990 GO:0005515
Chy12g01549 1224 Gene3D Tetratricopeptide repeat domain 278 363 IPR011990 GO:0005515
Chy12g01549 1224 Gene3D Tetratricopeptide repeat domain 26 167 IPR011990 GO:0005515
Chy12g01549 1224 Gene3D Tetratricopeptide repeat domain 168 271 IPR011990 GO:0005515
Chy12g01549 1224 Gene3D Tetratricopeptide repeat domain 563 662 IPR011990 GO:0005515
Chy12g01549 1224 Coils Coil 1052 1072 - -
Chy12g01549 1224 PANTHER OS09G0413300 PROTEIN 61 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01549 - - - bhj:120082449 1467.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01549 Chy-Chr12:19144764 Chy02g01011 Chy-Chr2:6821765 1.60E-80 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g545 . Blo16g00187 . . . Bpe13g00289 Bma06g00176 . Cmo13g01182 . . . . . . Cpe20g00022 . . . . . . . . . . . . . . . . . . . . Csa01g00539 Chy12g01549 . . . . . . . . . . . . Cma13g01128 . Car13g00963 . . . . . . . . . . Cla04g01204 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012059 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 2 1 1 1 0 1 26