Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy12g01554 | ATGGAAGGAAATGACCAACTTCACTATCACCAAAACCATCGCTCAAATGCTTCTTTTCCTCTTCAATTGCTAGAGAAGAAAGAATATGATCCTCAACCTCCTCTTGAGATCGTCTCTAAGAAGCCCTCTCCCAAGAGGACTTCTACTAAGGATCGCCACACCAAAGTCGATGGTCGAGGCCGACGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTTCAGCTCACTCGTGAGCTCGGCCACAAGTCCGATGGCGAAACGATTGAATGGCTTCTTCAGCAGGCTGAGCCTGCTGTTATCGCCGCGACGGGAACTGGAACGATACCGGCTAACTTCAACTCTCTTAATACGTCGTTAAGAAGATCAGCTACAAGCATTTCTTTACCATCTCAACTAAGATCCTCTTCTTATTATCACCCGGGAGTGATGGGATTCAACTCTGAAGCAATGAATAATATGGTTCAAATTACGACACAATTACCAAAAGAAGATCATCAGTACCATCTTCACCAATCCACCACCACCGGAGTAGTCCCCCCCACTACTATTCCGGCAAACTTTTGGATGCTTTCCGATCCCAACAACCAATTACTCGCCAGCGGAGTTGACCCTTTATGGAGGCTTCAGTCGGCTAATCAAGACGGCTCTTTATTCAGATCAGTACAACCCTCACCCTCCGGTGGCTTACGTTTATCGAATAATATTCTCGGCGGCCCTGCTCCATTGACGCTCCTCCCAGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGCTGCACGACGTGGAAACTTGAACAACGATCATGATGATGATGATGATGATAATGGACACTTGAATATCTATGCCACCCAAAATCCACCGCATGGGGCAGCGCCGGACACCGGCGTCTCGTAA | 897 | 48.49 | MEGNDQLHYHQNHRSNASFPLQLLEKKEYDPQPPLEIVSKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAMNNMVQITTQLPKEDHQYHLHQSTTTGVVPPTTIPANFWMLSDPNNQLLASGVDPLWRLQSANQDGSLFRSVQPSPSGGLRLSNNILGGPAPLTLLPGKPLSLGPTAGAARRGNLNNDHDDDDDDNGHLNIYATQNPPHGAAPDTGVS* | 299 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 19166908 | 19168784 | + | Chy12G221540.1 | Chy12g01554 | 239335 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy12g01554 | 298 | PANTHER | TRANSCRIPTION FACTOR TCP23 | 160 | 287 | - | - | |
Chy12g01554 | 298 | PANTHER | TRANSCRIPTION FACTOR TCP23 | 38 | 156 | - | - | |
Chy12g01554 | 298 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 160 | 287 | IPR005333 | GO:0003700 | |
Chy12g01554 | 298 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 38 | 156 | IPR005333 | GO:0003700 | |
Chy12g01554 | 298 | MobiDBLite | consensus disorder prediction | 43 | 61 | - | - | |
Chy12g01554 | 298 | MobiDBLite | consensus disorder prediction | 264 | 278 | - | - | |
Chy12g01554 | 298 | Pfam | TCP family transcription factor | 47 | 153 | IPR017887 | - | |
Chy12g01554 | 298 | ProSiteProfiles | TCP domain profile. | 49 | 103 | IPR017887 | - | |
Chy12g01554 | 298 | MobiDBLite | consensus disorder prediction | 247 | 298 | - | - | |
Chy12g01554 | 298 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Chy02g02504 | Chy12g01554 | CCT | |
Chy02g02504 | Chy12g01554 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy06g01548 | Chy-Chr6:17303644 | Chy12g01554 | Chy-Chr12:19166908 | 1.60E-37 | dispersed | |
Chy10g00749 | Chy-Chr10:13690054 | Chy12g01554 | Chy-Chr12:19166908 | 5.37E-44 | dispersed | |
Chy11g02002 | Chy-Chr11:25904458 | Chy12g01554 | Chy-Chr12:19166908 | 2.41E-37 | dispersed | |
Chy11g01807 | Chy-Chr11:24424506 | Chy12g01554 | Chy-Chr12:19166908 | 2.91E-26 | transposed | |
Chy10g00992 | Chy-Chr10:15398882 | Chy12g01554 | Chy-Chr12:19166908 | 3.40E-58 | wgd | |
Chy12g01554 | Chy-Chr12:19166908 | Chy02g02504 | Chy-Chr2:28485684 | 5.22E-09 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18913 | PF03634 | TCP | 8.50E-36 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy12g01554 | - | - | csv:101218047 | 564.688 |