Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01554 ATGGAAGGAAATGACCAACTTCACTATCACCAAAACCATCGCTCAAATGCTTCTTTTCCTCTTCAATTGCTAGAGAAGAAAGAATATGATCCTCAACCTCCTCTTGAGATCGTCTCTAAGAAGCCCTCTCCCAAGAGGACTTCTACTAAGGATCGCCACACCAAAGTCGATGGTCGAGGCCGACGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTTCAGCTCACTCGTGAGCTCGGCCACAAGTCCGATGGCGAAACGATTGAATGGCTTCTTCAGCAGGCTGAGCCTGCTGTTATCGCCGCGACGGGAACTGGAACGATACCGGCTAACTTCAACTCTCTTAATACGTCGTTAAGAAGATCAGCTACAAGCATTTCTTTACCATCTCAACTAAGATCCTCTTCTTATTATCACCCGGGAGTGATGGGATTCAACTCTGAAGCAATGAATAATATGGTTCAAATTACGACACAATTACCAAAAGAAGATCATCAGTACCATCTTCACCAATCCACCACCACCGGAGTAGTCCCCCCCACTACTATTCCGGCAAACTTTTGGATGCTTTCCGATCCCAACAACCAATTACTCGCCAGCGGAGTTGACCCTTTATGGAGGCTTCAGTCGGCTAATCAAGACGGCTCTTTATTCAGATCAGTACAACCCTCACCCTCCGGTGGCTTACGTTTATCGAATAATATTCTCGGCGGCCCTGCTCCATTGACGCTCCTCCCAGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGCTGCACGACGTGGAAACTTGAACAACGATCATGATGATGATGATGATGATAATGGACACTTGAATATCTATGCCACCCAAAATCCACCGCATGGGGCAGCGCCGGACACCGGCGTCTCGTAA 897 48.49 MEGNDQLHYHQNHRSNASFPLQLLEKKEYDPQPPLEIVSKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAMNNMVQITTQLPKEDHQYHLHQSTTTGVVPPTTIPANFWMLSDPNNQLLASGVDPLWRLQSANQDGSLFRSVQPSPSGGLRLSNNILGGPAPLTLLPGKPLSLGPTAGAARRGNLNNDHDDDDDDNGHLNIYATQNPPHGAAPDTGVS* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19166908 19168784 + Chy12G221540.1 Chy12g01554 239335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01554 298 PANTHER TRANSCRIPTION FACTOR TCP23 160 287 - -
Chy12g01554 298 PANTHER TRANSCRIPTION FACTOR TCP23 38 156 - -
Chy12g01554 298 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 160 287 IPR005333 GO:0003700
Chy12g01554 298 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 38 156 IPR005333 GO:0003700
Chy12g01554 298 MobiDBLite consensus disorder prediction 43 61 - -
Chy12g01554 298 MobiDBLite consensus disorder prediction 264 278 - -
Chy12g01554 298 Pfam TCP family transcription factor 47 153 IPR017887 -
Chy12g01554 298 ProSiteProfiles TCP domain profile. 49 103 IPR017887 -
Chy12g01554 298 MobiDBLite consensus disorder prediction 247 298 - -
Chy12g01554 298 MobiDBLite consensus disorder prediction 1 61 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02504 Chy12g01554 CCT
Chy02g02504 Chy12g01554 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01548 Chy-Chr6:17303644 Chy12g01554 Chy-Chr12:19166908 1.60E-37 dispersed
Chy10g00749 Chy-Chr10:13690054 Chy12g01554 Chy-Chr12:19166908 5.37E-44 dispersed
Chy11g02002 Chy-Chr11:25904458 Chy12g01554 Chy-Chr12:19166908 2.41E-37 dispersed
Chy11g01807 Chy-Chr11:24424506 Chy12g01554 Chy-Chr12:19166908 2.91E-26 transposed
Chy10g00992 Chy-Chr10:15398882 Chy12g01554 Chy-Chr12:19166908 3.40E-58 wgd
Chy12g01554 Chy-Chr12:19166908 Chy02g02504 Chy-Chr2:28485684 5.22E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18913 PF03634 TCP 8.50E-36 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01554 - - csv:101218047 564.688