Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01563 ATGACCACCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCCTTCTTTCAGCTTCAGACTACTCATCACAGCAGTATCCGTTCAACCGAGACGCTTATGCGAATTCGAAGTATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTGAATCAATTTCAGATTCACTGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCACCTTCTCCTTCTCCCAGAAGATGCACGCCTTCAACCAGGCTCTACATCAGTGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAGAATAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGGCATTGCCTCTTTCCCCGTCTCCTGAGCCAAGTGAAACTTACCAGCAGACAGTTACTAATTCCCTCCCTTATCCTTTTCTCCTTAAAGCTTTCATATTTGCGATCACTTACCATCGAAACTGA 582 45.88 MTTGLSFTVTAAPKPFFQLQTTHHSSIRSTETLMRIRSIQSKLAYSSTPLPFFSARKTESISDSLLFSVACVSSSPSPSPSPRRCTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRIANRPRGFAFLRYASEEESQKAIEGMHGKALPLSPSPEPSETYQQTVTNSLPYPFLLKAFIFAITYHRN* 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19217305 19218895 - Chy12G221630.1 Chy12g01563 239344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01563 193 PANTHER TRANSFORMER-2-RELATED 4 155 - -
Chy12g01563 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 162 IPR000504 GO:0003723
Chy12g01563 193 SUPERFAMILY RNA-binding domain, RBD 75 154 IPR035979 GO:0003676
Chy12g01563 193 MobiDBLite consensus disorder prediction 148 168 - -
Chy12g01563 193 SMART rrm1_1 90 160 IPR000504 GO:0003723
Chy12g01563 193 PANTHER RNA-BINDING PROTEIN 1 4 155 - -
Chy12g01563 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 155 IPR000504 GO:0003723
Chy12g01563 193 Gene3D - 55 160 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01563 - - - csv:101214703 269.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01563 Chy-Chr12:19217305 Chy04g01904 Chy-Chr4:25089617 1.04E-16 dispersed
Chy12g01563 Chy-Chr12:19217305 Chy02g02442 Chy-Chr2:28066545 3.22E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g988 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00047 Csa01g00522 Chy12g01563 Cme12g02019 Blo13g00083 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013007 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28