Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01566 ATGACCAGTACTACTACTCAACAACTCTCTGTTCTGTCTCTCATTTCCTTCATTCTTCTGATCTCTACCGCAGTTTCTTATTCAGAAGCCCATGGCTTAAACATGAACGCCATTGACAGATGCTGGAGATCCAACCCATACTGGAGAAAAAACAGACAACAACTCGCCACTTGTTCAGTAGGTTTCGCCGGAAAAATGACCAACAACATGGGAAGAAATCTCATACACTACCAAGTCACTGACCCAAGCGATGACCCTATAAACCCACGTCCAGGTACTCTCAGATACGGCGCCACAATGATCAAACACAAAGTCTGGATCACATTTAAAAAAGACATGCACATTGTGCTTCAGAAGCCTCTTCTCATCAGCAGCTTCACCGCCATCGACGGCCGAGGCTCCACCGTCCACATCACCGGAAACGCCTGTCTGATGGTGCTCAGAGCCACCAACATTATAATCCACGGCCTTATCATCCACCACTGCAAGTCTCAGGCGGCGGGTCAAGTCATGGGCCCCAATGCTAAGGTAATTTCACTTGGAAACGTGGACGGAGATGCCATCCGTTTAGTAACGGCCTCGAAAGTTTGGATTGACCACAACACGCTGTACCGGTGCGAGGATGGATTGCTCGACGTCACCCGTGGGTCCACTGACATAACCATTTCCAACAATTGGTTCCGGGACCAAGACAAGGTTATTCTTCTTGGTCATGATGATGGCTATGTTAGAGATCGGAGCATGAGAGTCACTGTCCTCTATAACCATTTTGGACCAAATTGTAACCAAAGAATGCCCAGGATTCGATATGGGTATGCACACGTGGCAAACAATTTATACCAAGGTTGGACGCAATACGCAATCGGAGGGAGCATGAACCCGAGCGTGAAGAGTGAAGCCAACCTTTTCATCGCATCAAAGTCAAAACAGGTCATATGGAGCACAGGGAAAGTAGAGGCAAAATGGAAGTTTCACTCAGTGAGAGACGCATTTGAAAACGGAGCATCGTTTGCAGAGATTGGAGTGGGGAGAGGAAGAGTAAAGCCAAATTACAATCCCCAACAGCGGTTTCCAGTGGCAGATGCTAAGTGGATCAGATCATTGACAAGCTCCTCCGGGGCATTGCGCTGCACATCAAATTCTAAATGCTGA 1152 47.74 MTSTTTQQLSVLSLISFILLISTAVSYSEAHGLNMNAIDRCWRSNPYWRKNRQQLATCSVGFAGKMTNNMGRNLIHYQVTDPSDDPINPRPGTLRYGATMIKHKVWITFKKDMHIVLQKPLLISSFTAIDGRGSTVHITGNACLMVLRATNIIIHGLIIHHCKSQAAGQVMGPNAKVISLGNVDGDAIRLVTASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRSMRVTVLYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQVIWSTGKVEAKWKFHSVRDAFENGASFAEIGVGRGRVKPNYNPQQRFPVADAKWIRSLTSSSGALRCTSNSKC* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19226884 19228225 - Chy12G221660.1 Chy12g01566 239347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01566 383 PANTHER PECTATE LYASE 18-RELATED 15 380 IPR045032 GO:0030570
Chy12g01566 383 Gene3D - 35 376 IPR012334 -
Chy12g01566 383 Pfam Pectate lyase 127 303 IPR002022 -
Chy12g01566 383 SUPERFAMILY Pectin lyase-like 35 374 IPR011050 -
Chy12g01566 383 PRINTS Pollen allergen Amb family signature 58 75 IPR018082 -
Chy12g01566 383 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Chy12g01566 383 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Chy12g01566 383 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Chy12g01566 383 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Chy12g01566 383 PRINTS Pollen allergen Amb family signature 354 377 IPR018082 -
Chy12g01566 383 SMART amb_all 112 309 IPR002022 -
Chy12g01566 383 PANTHER PECTATE LYASE 15 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy12g01566 Chy-Chr12:19226884 Chy02g00418 Chy-Chr2:2640386 2.08E-101 dispersed
Chy12g01566 Chy-Chr12:19226884 Chy12g01100 Chy-Chr12:16015940 8.19E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01566 K01728 - csv:101217103 717.613