Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01567 ATGGGGAGGAAGAAGAGAACCGATGCTGGTGGTGAAAGTTCTGAGTCTCAAGATGGTGGTGGTCGTGGCTCCCAAAGATCAGCTGAAAGGAGAGACACCCCACAGCAACATGGTGGTAGTGGGTACCAGGGTGGGAGAGGTTGGGGTTCTCAAGGGGGACGTGGAGGCCAAGGTGGTGGAGGGCGTGGCCGAGGAACGTCTCAACATCAGCACTATGGAGGACCTCCCGATCACCAAGGCAGGGGTAGAGGTGGGCCATATCATGGAGGACGTAATAACTATGGTGGTGGTGGTGGTAATCGTGGTGGCATGGGTGGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGACCATCCAGGTCACTAGTTCCCGAGCTGCACCAAGCAACCCCAATGTATCAAGGAGGGATGACTCAGCCAGTCTCATCTGGGGCGAGTTCTTCCTCCCATCCATCTGACACTTCATCAATTGATCAACAATTTCAACAAATTTCCATTCAACAGGAATCCTCTCAAAGTCAAGCAATTCAACCTGCACCACCATCTAGTAAATCCTTGAGATTCCCACTGAGACCAGGAAAGGGTAGCTCTGGCACAAGGTGTATTGTTAAGGCTAACCATTTCTTCGCTGAGTTACCCGACAAAGATCTTCATCAGTATGATGTTACTATTACCCCAGAAGTTACTTCGCGTGTCTACAACCGAGCTGTAATGGAACAGCTAGTTAAATTATATAGAGTCTCACACCTTGGAGATCGGCTTCCTGCTTATGATGGAAGAAAAAGTTTATATACGGCCGGTCCCCTCCCTTTTACATCTAATGAGTTTAGAATAACTCTTTTTGATGAAGAAGATGGATCTGGTGGACAAAGACGGGAAAGGGAATTTAAAGTTGTAATAAAATTTGCTGCACGTGCTGATCTACACCATCTTGGACTCTTTTTGCAAGGCAGACAGGCCGATGCCCCTCAAGAAGCTCTTCAAGTTCTGGATATTGTATTACGAGAATTACCTACTTCAAGGTATTGTCCAGTGGCCCGATCATTTTACTCTCCAGACCTTGGCAGACGTCAGACACTGGGTGAGGGGCTGGAAAGTTGGCGTGGTTTCTATCAGAGTATCCGCCCTACTCAAATGGGACTCTCCCTTAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCATGTCATTGAATTTGTCACTCAACTTCTCAATCGTGACGTGTCGTCCAGACCATTATCTGATGCTGACCGTGTGAAGATAAAGAAGGCTCTTCGAGGTGTCAAGGTTGAAGTGACACACCGTGGGAATATGCGCAGAAAATATCGCATTTCTGGTCTGACATCACAAGCAACACGCGAGCTAACTTTCCCTGTTGATGAGAGAGGTACTATGAAGTCAGTGGTTGAGTACTTCTACGAAACATATGGGTTCGTTATCCAACATACCCAGTGGCCTTGTCTTCAAGTAGGGAATCAGCAGAGACCTAATTATCTACCGATGGAAGTATGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTTAATGAAAGACAAATAACTGCTCTGCTCAAGGTTACATGCCAACGGCCCAAAGATAGAGAGGAAGACATTATGCAGACGGTACACCATAATGCATACCATAATGATCCATATGCCAAGGAGTTTGGAATCAAGATCAGTGAGAAGCTTGCTTCTGTTGAAGCTCGTATTCTTCCAGCACCATGGCTAAAATATCATGACACCGGCAGAGAAAAAGATTGTTTGCCTCAAGTTGGACAATGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTTAACAACTGGATGTGCATTAATTTCTCTCGCTATGTGCAAGACAGTGTTACTCGTGGCTTTTGTTATGAACTTGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTTCTTCCCCCTATTTTTGCTCGTCCAGATCATGTGGAAAAGGCCCTTAAAACTCGGTACCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTTGATTTGCTTATTGTTGTATTACCAGATAACAACGGATCCCTTTATGGTGATTTAAAGCGTATCTGTGAAACTGATCTTGGCCTCGTTTCCCAGTGCTGTTTGACTAAACATGTTTTCAAAATGAGTAAACAGTATTTGGCCAATGTGGCCTTAAAAATAAACGTTAAGGTTGGGGGAAGGAATACGGTACTTGTTGATGCATTATCTAGGCGCATACCCTTGGTTAGCGACCGGCCTACCATTATATTTGGCGCCGATGTAACTCATCCTCACCCAGGAGAAGACTCCAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCGGAAGTTACAAAATATGCTGGTTTGGTTAGTGCTCAAGCCCACAGGCAAGAACTCATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTTAGGGGGACAGTAACGGGTGGAATGATCAAGGAACTTCTCATCTCCTTCCGTCGAGCAACTGGACAGAAACCTCAACGCATTATATTTTACAGGGATGGGGTTAGCGAAGGACAGTTCTACCAAGTTTTGTTGCATGAGCTGGATGCCATTAGAAAGGCATGTGCTTCTTTGGAACCAAACTACCAACCTCCAGTGACATTTGTGGTGGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAATAACCATTCTGATCGCCATACAGTCGACAAGAGTGGGAACATATTACCTGGCACGGTTGTCGATTCTAAAATTTGTCACCCCACGGAGTTCGATTTTTACCTGTGCAGTCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTTTATGGGATGAGAACAAGTTCACTGCTGATGGATTGCAGACCCTAACGAATAATCTCTGTTACACATATGCTAGGTGTACTCGCTCCGTTTCTATTGTGCCCCCAGCGTACTACGCTCATCTTGCTGCTTTTCGAGCTCGTTTCTATATGGAACCTGAAACCTCTGACAGTGGGTCAATTAGCAGTGAAGTTGCTGGACGTGGTGGCGTTGGTGGTGCTCGCAGTACACGGGCACCAGGTGTGAATGCTGCTGTTCGACCTTTGCCAGCTCTGAAAGAGAATGTTAAGAGGGTTATGTTCTATTGTTGA 3177 45.83 MGRKKRTDAGGESSESQDGGGRGSQRSAERRDTPQQHGGSGYQGGRGWGSQGGRGGQGGGGRGRGTSQHQHYGGPPDHQGRGRGGPYHGGRNNYGGGGGNRGGMGGGGIGGGPSSGGPSRSLVPELHQATPMYQGGMTQPVSSGASSSSHPSDTSSIDQQFQQISIQQESSQSQAIQPAPPSSKSLRFPLRPGKGSSGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMEQLVKLYRVSHLGDRLPAYDGRKSLYTAGPLPFTSNEFRITLFDEEDGSGGQRREREFKVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRYCPVARSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLHVIEFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREEDIMQTVHHNAYHNDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHTVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSEVAGRGGVGGARSTRAPGVNAAVRPLPALKENVKRVMFYC* 1059
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19234555 19240630 + Chy12G221670.1 Chy12g01567 239348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01567 1058 Pfam PAZ domain 400 525 IPR003100 GO:0005515
Chy12g01567 1058 Gene3D paz domain 389 514 - -
Chy12g01567 1058 PANTHER PROTEIN ARGONAUTE 1A 88 1057 - -
Chy12g01567 1058 CDD Piwi_ago-like 554 1006 IPR045246 -
Chy12g01567 1058 Pfam N-terminal domain of argonaute 200 334 IPR032474 -
Chy12g01567 1058 Pfam Glycine-rich region of argonaut 73 181 IPR024357 -
Chy12g01567 1058 ProSiteProfiles Piwi domain profile. 686 1007 IPR003165 GO:0003676
Chy12g01567 1058 SMART DUF1785_2 343 395 IPR014811 -
Chy12g01567 1058 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 88 1057 - -
Chy12g01567 1058 CDD PAZ_argonaute_like 395 509 - -
Chy12g01567 1058 Pfam Piwi domain 687 1006 IPR003165 GO:0003676
Chy12g01567 1058 MobiDBLite consensus disorder prediction 132 181 - -
Chy12g01567 1058 Gene3D - 574 749 - -
Chy12g01567 1058 MobiDBLite consensus disorder prediction 1 196 - -
Chy12g01567 1058 Pfam Argonaute linker 1 domain 345 394 IPR014811 -
Chy12g01567 1058 SUPERFAMILY Ribonuclease H-like 681 1007 IPR012337 -
Chy12g01567 1058 MobiDBLite consensus disorder prediction 1010 1032 - -
Chy12g01567 1058 ProSiteProfiles PAZ domain profile. 396 510 IPR003100 GO:0005515
Chy12g01567 1058 Gene3D - 755 1058 IPR036397 GO:0003676
Chy12g01567 1058 SUPERFAMILY PAZ domain 203 547 IPR036085 GO:0005515
Chy12g01567 1058 SMART Piwi_a_2 686 1007 IPR003165 GO:0003676
Chy12g01567 1058 Pfam Argonaute linker 2 domain 536 582 IPR032472 -
Chy12g01567 1058 Pfam Mid domain of argonaute 593 667 IPR032473 -
Chy12g01567 1058 SMART PAZ_2_a_3 400 532 IPR003100 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01948 Chy-Chr2:22949375 Chy12g01567 Chy-Chr12:19234555 0 dispersed
Chy05g00520 Chy-Chr5:5639344 Chy12g01567 Chy-Chr12:19234555 3.60E-161 dispersed
Chy06g00536 Chy-Chr6:3650919 Chy12g01567 Chy-Chr12:19234555 1.17E-98 dispersed
Chy06g00537 Chy-Chr6:3652652 Chy12g01567 Chy-Chr12:19234555 0 dispersed
Chy10g01036 Chy-Chr10:15627396 Chy12g01567 Chy-Chr12:19234555 0 dispersed
Chy12g00749 Chy-Chr12:11488840 Chy12g01567 Chy-Chr12:19234555 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01567 K11593 - csv:101212130 1925.6