Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01575 ATGGCTCAGGCGGCAAGTCGATCCAAATTGCGGTGGGGAGAGCTAGATGACGACGACGGTGATCTGGATTTTCTTCTACCGCCCAAGAAAATCATCGGTCCAGACGAGAACGGTGTGAAGAAAATTATTGAATATCAGTTCAATGAAGATGGTAATAAGGTCAAGATCACAACCACCACGCGTACTCGCAAGCTCGCCAATGCTCGCCTCAGTAAACACGCCGTCGAGCGCCGATCTTGGGCAAAGTTCGGCGACGCTGTGCATGAGGATGTCGGCAGCCGTCTCACTATGGTCTCCACTGAGGAGATCCTCCTGGAACGCCCTCGTGCTCCTGGTAGCAAACCAGAAGAGCCAAAGGTTGCAGGAGACCCTCTAGCTCAACTTGGAAAAGGTGGTGCTGTTCTTATGGTGTGTCGTACTTGTGGCAAAAAGGGTGATCACTGGACCTCGAGGTGCCCTTACAAAGACTTGGCACCACAAGGTGAGGGATTGGATAAGGCTACTGCACCAGAGGCTGCAGGTGCTGCACCTGGTGGTGCAACTAAGGGAACTTATGTTCCTCCAGGTATGAGAGCAGGAGCAGACAGGACTGGAACTGATATGAGACGTAGGAACGATGAAAACTCTGTTCGTGTCACCAATCTCTCGGAGGACACGAGAGAGCCTGATCTGCTTGAGCTTTTCCGACCTTTCGGTGCTGTTAGCCGAGTTTATGTTGCAGTTGACCAGAAGACTGGTATGAGCAGAGGATTTGGTTTCGTGAACTTTGTGAACCGTGAGGATGCTCAAAGAGCTATCAACAAACTGAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCTACTCCAAGGGCTACTTAA 870 50.46 MAQAASRSKLRWGELDDDDGDLDFLLPPKKIIGPDENGVKKIIEYQFNEDGNKVKITTTTRTRKLANARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQGEGLDKATAPEAAGAAPGGATKGTYVPPGMRAGADRTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAT* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19280358 19281740 + Chy12G221750.1 Chy12g01575 239356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01575 289 Gene3D - 182 289 IPR012677 -
Chy12g01575 289 SMART rrm1_1 209 282 IPR000504 GO:0003723
Chy12g01575 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Chy12g01575 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 276 IPR000504 GO:0003723
Chy12g01575 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 288 - -
Chy12g01575 289 CDD RRM_eIF3G_like 209 284 IPR034240 -
Chy12g01575 289 PIRSF Transl_init_eIF-3_RNA-bind 1 289 IPR017334 GO:0003743|GO:0005737|GO:0005852
Chy12g01575 289 Pfam Eukaryotic translation initiation factor 3 subunit G 32 157 IPR024675 -
Chy12g01575 289 SUPERFAMILY RNA-binding domain, RBD 206 287 IPR035979 GO:0003676
Chy12g01575 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 288 - -
Chy12g01575 289 MobiDBLite consensus disorder prediction 163 207 - -
Chy12g01575 289 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Chy12g01575 289 CDD eIF3G 37 156 IPR024675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01392 Chy-Chr6:14433995 Chy12g01575 Chy-Chr12:19280358 9.15E-175 dispersed
Chy12g01575 Chy-Chr12:19280358 Chy05g01481 Chy-Chr5:18571389 5.49E-11 dispersed
Chy12g01575 Chy-Chr12:19280358 Chy01g02153 Chy-Chr1:26171270 2.68E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01575 K03248 - csv:101212619 556.214