Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01580 ATGGCTGCTTTTGAAAAAGACGATATACCAATGCTATCGAACACTGATCCACCAATGTTTGACGAACAAGTGGATTCTTATTTTCCTTCATATGCATCCTTGGGCCGGAGTTCGTCACTATCAATTCCAGCAAATTCTTCTGGGATGTATGGTAGCGAAGCAAATCTTGTTGGTCATACTGGTCCCCTACGAATCGAAAGAAGTTCATTCGCGGTGAGTGGTTCAAAAAATAATGGCAGTAAGCCCAAAAAACTTTTGCAGTCAAAGCCAGGAGTGACTGAAAGCAAGACAGCAGAGCCGCTGGCAGAAAAATTTCCTTCGTTCAAGATTGGAGATGAGTCTGATTGGTCCATTCATAACTATGCCGGTAGGAACGAACACTTAATAAAGTCTGGCCAGCTGGGATTGTGTAATGATCCTTTCTGTATAACTTGCCCAACATATAATTCCAAAGCATCACAACAGAAAAGCTCAAGAATATCAGGCATATTTGACGCCAAGTTTCATAATGATCTCTATGGAGGAGGGAAAGGATGGGCGGGGAAGTTTCAGTCCTACTGGTGCTTCTTGCTTTCATATATTCCTGGTGTTATGAATCCTCATGCAAAAGTTGTTCAGCAATGGAATAAGTTTTTTGTCATTTCTTGCTTGGTGGCAATCTTCTTGGACCCATTGTTTTTCTTCTTGCTGTCTGTTCAAGAGAATAATAAGTGCATTGTTATTGACTGGCCTTTGACCACAACCTTGGTGGTTTTCCGGAGCATGACTGATTTTATCTATTTCCTACACATGCTTCTTCAGTTTAGGTTGGCCTATGTAGCACCAGAATCTAGAGTTGTTGGTGCTGGCGAATTGGTTGACCATCCGAAGAAAATTGCCATGAATTACCTTAAAGGAAATTTTTTTATAGATTTGCTTGTTGTTTTGCCGCTGCCTCAGATCATAATTTTTTTAATCCTGCCAAAGTCTTTGGGGTCATCTGGAGCAAATTATGCCAAAAATCTATTACGCACTGCAGTTACTGTTCAATATATTCCCAGACTGTATAGGTTTCTACCTCTTCTTGCTGGCCAGTCTCCAAGTGGCTTTGTATTTGAGACAGCATGGGCAAATTTTGTCATCAATCTTTTGACCTTTATGTTGGCTGGTCATATTGTTGGGTCTTTCTGGTATCTTCTTGGGCTTCAGAGGGTGACTCGATGTTTTCGAGAAGCTTGCATTAAGACTGGAAATAGGAGCTGCTTGGAATATATAGATTGTGGGCATGGGGATGAATCTAGTAGTCAGATTCTGGATCCACATCGGGATTCATGGAAACATAATGTGAATGCTACGGCATGTTTCGGCAGTGAAGGTTTCGATTATGGAATCTACCTTCAGGCTGTAAAACTTACCACAAAAAAGAGTATAATCACGAGATATACATACTCATTATTTTGGGGATTCCAGCAAATCAGTACTCTGGCCGGGAACCAAGTTCCAAGCTATTATGTCTATGAAGTCCTTTTCACTATGGGTATTATTGGGCTTGGTTTATTGCTGTTTGCTCTTCTCATCGGGAATATGCAGAACTTTCTCCAGGCTCTTGGAAGAAGGAGGTTAGAAATGTCACTACGACGTCGTGATGTCGAGCAATGGATGGAGCATCGTCGCTTACCAGAAGGTTTAAGAAGGCAAGTACGACAGGCTGAAAGATACAACTGGGCTTCTACAAGAGGAGTAAATGAAGAGAGAATTTTTGAAAATTTGCCTGAGGACCTACAAAAAAACATAAGACGGCATCTCTTTAAATTTGTCAACAAGGTTCGCATTTTTGCACTGATGGACTATGAACCTATTTTAGACGCAATACGTGAGAGACTGCGACAAAAGACATACATAGAAGGAAGTGAAGTTTTTTCTGCTGGAGATATCATTGAGAAGATGGTTTTCATCGTACGGGGGAAAATGGAGAGCCGTGTAGATGGAAATGGGATTGTGGTTCCCTTATCTGAAGGAGATGTCTGCGGTGAGGAACTTCTAACATGGTGTCTCGAGCATTCCTCCCTAAACAAAGATATGAAGCGGCAGCAAGTTCCAGCGCCAAGATTAGTAAGCAACCGGACAGTAAGATGCTTAAGTAATGTTGAAGCATTTTCTCTCCGGGCTGCAGACCTTGAAGAAGTGACTAGTATGTTTTCTAGATTCTTGCGAAACCCACGTGTTCAAGGAGCCATAAGGTACGAATCACCCTACTGGAGTTCGCCACCAGATGTGAGTATTGCAAGAACATCCAATTTCATGAGTATCCCTCGATTAATATTCTATAAAACATAA 2316 41.54 MAAFEKDDIPMLSNTDPPMFDEQVDSYFPSYASLGRSSSLSIPANSSGMYGSEANLVGHTGPLRIERSSFAVSGSKNNGSKPKKLLQSKPGVTESKTAEPLAEKFPSFKIGDESDWSIHNYAGRNEHLIKSGQLGLCNDPFCITCPTYNSKASQQKSSRISGIFDAKFHNDLYGGGKGWAGKFQSYWCFLLSYIPGVMNPHAKVVQQWNKFFVISCLVAIFLDPLFFFLLSVQENNKCIVIDWPLTTTLVVFRSMTDFIYFLHMLLQFRLAYVAPESRVVGAGELVDHPKKIAMNYLKGNFFIDLLVVLPLPQIIIFLILPKSLGSSGANYAKNLLRTAVTVQYIPRLYRFLPLLAGQSPSGFVFETAWANFVINLLTFMLAGHIVGSFWYLLGLQRVTRCFREACIKTGNRSCLEYIDCGHGDESSSQILDPHRDSWKHNVNATACFGSEGFDYGIYLQAVKLTTKKSIITRYTYSLFWGFQQISTLAGNQVPSYYVYEVLFTMGIIGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMEHRRLPEGLRRQVRQAERYNWASTRGVNEERIFENLPEDLQKNIRRHLFKFVNKVRIFALMDYEPILDAIRERLRQKTYIEGSEVFSAGDIIEKMVFIVRGKMESRVDGNGIVVPLSEGDVCGEELLTWCLEHSSLNKDMKRQQVPAPRLVSNRTVRCLSNVEAFSLRAADLEEVTSMFSRFLRNPRVQGAIRYESPYWSSPPDVSIARTSNFMSIPRLIFYKT* 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19306842 19330958 + Chy12G221800.1 Chy12g01580 239361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01580 771 MobiDBLite consensus disorder prediction 71 94 - -
Chy12g01580 771 Gene3D Jelly Rolls 602 728 IPR014710 -
Chy12g01580 771 CDD CAP_ED 604 722 IPR000595 -
Chy12g01580 771 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 748 - -
Chy12g01580 771 ProSiteProfiles cAMP/cGMP binding motif profile. 617 674 IPR000595 -
Chy12g01580 771 Gene3D Helix hairpin bin 527 596 - -
Chy12g01580 771 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 6 748 - -
Chy12g01580 771 Pfam Ion transport protein 208 532 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Chy12g01580 771 SUPERFAMILY Voltage-gated potassium channels 203 527 - -
Chy12g01580 771 SUPERFAMILY cAMP-binding domain-like 532 730 IPR018490 -
Chy12g01580 771 Gene3D - 210 526 - -
Chy12g01580 771 MobiDBLite consensus disorder prediction 71 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00212 Chy-Chr9:1790434 Chy12g01580 Chy-Chr12:19306842 3.37E-84 dispersed
Chy12g01580 Chy-Chr12:19306842 Chy11g00817 Chy-Chr11:11708053 1.28E-105 dispersed
Chy12g01580 Chy-Chr12:19306842 Chy06g00103 Chy-Chr6:680407 4.41E-124 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01580 K05391 - csv:101215903 1436.01