Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy12g01582 | ATGGACTTTGGCGGTGGCTCCGGTTGGGACAACGATCCCTCCTCCGACCCTCAACGCAGAAAAAAACGCTACCATCGTCACAATGCCAACCAGATTCAGAGACTCGAAGCAATGTTCAAAGAATGCCCACACCCAGATGAGAAGCAGAGATTACAGTTAAGTAGAGAACTGGGATTGGCTCCTCGACAAATCAAATTTTGGTTCCAGAATCGGAGGACCCAGATGAAGGCTCAACATGAAAGGGCAGATAATAGTGCACTTCGAGCAGAGAACGACAAGATTCGATGCGAGAACATAGCCATCAGAGAGGCACTCAAAAATGTTATTTGTCCTTCCTGCGGTGGCCCTCCCCTTCAGGACCCCTACTTCGACGAGCATAAACTTCGAATCGAAAACGCCCATTTGAAAGAAGAGCTTGATAGAGTATCTAGCATTGCAGCCAAGTATATTGGGAGGCCAATCTCTCAACTTCCACCCATTCAACCTTCTCATTTCTCCTCCTTGGAACTGTCCATGGGTAGTTTTCCCTCCCAAGAAATGGGATGTCCTTCTCTTGATCTTGATTTACTTTCTGCAAGTTCTACAAGTGTTCCTAATTTACCATACCATCATCCAATTCACCTATCCTCCGTGGATAAGTCTCTCATGACTGAAATTGCCACAAATGCCATGGCAGAGTTGCTTAGGCTTTCCCAAACTAATGAGCCTTTCTGGATGAAATCGCCAACTGATGGTCGTGACCTTCTCGACCTTGAAACCTATGAACATGCTTTTCCAAGACCCAACACTCCCTTGAAGAATCTACATTTTCGCACCGAAGCATCAAGAGACTCAGGTGTCGTGATCCTAAGTAGTGCAGCATTGGTTGACATTTTTATGGACTCGAACAAATGGACAGAGTTATTTCCCACAATTGTCTCAATTGCAAGAACACTTGAAGTTGTATCGTCCGGGATGTTGGGAAGTCCGAATGGCTCCTTGCAACTGATGTACCAAGAATTGCAGCTACTCTCCCCATTGGTTCCAACTCGTCACTTTTACTTCATCCGGTATTGTCAACAAATCGAGCAGGGTGTGTGGGCTGTGGTTGATGTTTCCTACAATATTCCCAGGGAAAACCAAATAGTTTCTCATCCTCAATGTCACCGCTTTCCCTCTGGTTGCTTGATCCAGGACATGCCTAATGGTTACTCTAAGGTTACTTGGATTGAGCATGTAGAAGTGGAAGATAGAGGCTCGACTCATTGGCTTTTTAGAGATCTTATTCATAGTGGGTTAGCGTTTGGTGCTGAACGGTGGCTTGCAACTCTTCAGCGGATGTCTGAAAGGTTTGCCTGTTTAATGGTGACTAGTAGTTCCAATCAGGATCTTGGCGGAGTAATTCCATCTCTAGAAGGAAAAAGGAGCATGATGAAACTAGCACAACGAATGGTAAACAATTTTTGTGCTAGTATCAGCACATCTCATGGACACCGTTGGACCACCCTTTCTGGGATGAATGAGGTTGGTGTTCGTGTCACGGTGCATAAAAGCACAGATTCTGGCCAACCTAATGGTGTGGTTCTTAGTGCAGCTACAACCATTTGGCTCCCAGTTTCCCCTCAAACCATCTTTAACTTCTTTAAGAACGACAGAACCAGATCCCAGTGGGATGTTCTCTCGGATGGCAATCCACTTCAAGAGGTTGCTCATATATCCAACGGATCCCACCCAGGGAATTGCATATCTGTTCTCAGAGCTTTCAATACAAGTCAGAACAACATGTTGATTCTCCAAGAGAGTTGCATAGACTCATCAGGGTCACTTGTTGTGTACTGCCCAGTGGATCTACCAGCCATGAATGTTGCAATGAGTGGGGAGGACCCATCAAGTATTCCTTTACTACCTTCGGGATTCACAATTTTACCAGACGGTCGACGGGACCAAGGAGAGGGTGCATCGAGCAGCTCAGACGTGCATAACAGGTCAGGGGGTTCGCTGGTGACGGTTGCATTTCAAATACTAGTAAGCAGCTTGCCATCTGGGAAGCTGAACTTGGAGTCAGTGACAACGTGGCGGGGGATTTGGCAATTGGCACTGCAGCTGCACAGTGGGACTTGGAGCTCTTTCATAAAGCAGAAGAGGCACAGAGACAGAGAAGCTTACAGAACATTGGCCATGGCGTTCTGTACACCTGTTAACAACTACTCTGTAGTTTCTTCTTTTCTTTATAGTAATTCTTCGGCGACGCAAAAGAGAGCAAGACGGTTTTGTATTTGTGCCAAGAACAAAAGCAACGCCAGTTCGTTGCAGTACAGAAAACTTGGGGACTCTGACCTTCAAGTTTCGGAAGTTACGCTTGGAACGATGACTTTTGGGCAACAAAACACCGAGACAGAAGCTCATGAACAACTGAATTACGCTTATGAGCATGGAATCAATATTATAGATACCGCAGAGGCATATCCAGTTCCAATGAAACAAGAGACACAGGGAAGGACCGACATTTACATTGGTAACTGGCTCAAATCAAAGCCCAGAGATAAGATTATTTTGGCGACAAAAGTCTGTGGATACTTGGAGCAATCCACTTATTTGCGTGAAAATGCAAAGGCCATACGGGTTGATCGTGCCAATATCAGAGAAAGTGTAGAGAAAAGTCTCAAGCGGCTGAACACTGACTACATTGACTTACTGCAAATTCACTGGCCAGACCGGTATGTTCCCCTATTTGGGACTTTTGTTTATGATTCTTCGAAATGGAGGCCAAGTGTGCCTTTTATAGAGCAGCTGAAGGCATTTCAGGAACTTATCGAAGAAGGAAAGATACGCTATATTGGTGTTTCAAATGAGACTTCATATGGAGTGATGGAATTTGTTCACGCAGCAAAAATTGAAGGATTGCCAAAGATCGTTAGTATCCAAAATAATTACAGTCTTATTAATAGATGCCGCTTTGAAGTCGATCTTGTTGAGGTTTGTCATCCAAACAACTGCAATGTTGGCTTGCTTGGTTATTCTCCTTTGGGTGGTGGAACGCTTAGTGGCAAATACTTGGATGTCAATTATCAAGATTCAGGAAAAGGAAGGCTGAACCTCTTCCCCGGCTTCATGGATAGATACAATAAATCTATTGCCAAGGATGCAATAACTGAATACGTGCAGTTGGCCAAAAAGTATGGCCTAACTCCAGTACAGCTTGCACTTGGGTTTGCTCGAGACCGTCCATTTATGACGAGTTCTATCATTGGCGCAACTTCCATGGACCAGCTTAGAGAAGACCTCGATGCTTTCACAATGACCGAGCGGCCATTGCCTGCAGAAGTGTTGGAAGACATTGAAGCCATTTTCCGAAGATACAAAGATCCAGCTATCTAG | 3357 | 44.98 | MDFGGGSGWDNDPSSDPQRRKKRYHRHNANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYFDEHKLRIENAHLKEELDRVSSIAAKYIGRPISQLPPIQPSHFSSLELSMGSFPSQEMGCPSLDLDLLSASSTSVPNLPYHHPIHLSSVDKSLMTEIATNAMAELLRLSQTNEPFWMKSPTDGRDLLDLETYEHAFPRPNTPLKNLHFRTEASRDSGVVILSSAALVDIFMDSNKWTELFPTIVSIARTLEVVSSGMLGSPNGSLQLMYQELQLLSPLVPTRHFYFIRYCQQIEQGVWAVVDVSYNIPRENQIVSHPQCHRFPSGCLIQDMPNGYSKVTWIEHVEVEDRGSTHWLFRDLIHSGLAFGAERWLATLQRMSERFACLMVTSSSNQDLGGVIPSLEGKRSMMKLAQRMVNNFCASISTSHGHRWTTLSGMNEVGVRVTVHKSTDSGQPNGVVLSAATTIWLPVSPQTIFNFFKNDRTRSQWDVLSDGNPLQEVAHISNGSHPGNCISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAMNVAMSGEDPSSIPLLPSGFTILPDGRRDQGEGASSSSDVHNRSGGSLVTVAFQILVSSLPSGKLNLESVTTWRGIWQLALQLHSGTWSSFIKQKRHRDREAYRTLAMAFCTPVNNYSVVSSFLYSNSSATQKRARRFCICAKNKSNASSLQYRKLGDSDLQVSEVTLGTMTFGQQNTETEAHEQLNYAYEHGINIIDTAEAYPVPMKQETQGRTDIYIGNWLKSKPRDKIILATKVCGYLEQSTYLRENAKAIRVDRANIRESVEKSLKRLNTDYIDLLQIHWPDRYVPLFGTFVYDSSKWRPSVPFIEQLKAFQELIEEGKIRYIGVSNETSYGVMEFVHAAKIEGLPKIVSIQNNYSLINRCRFEVDLVEVCHPNNCNVGLLGYSPLGGGTLSGKYLDVNYQDSGKGRLNLFPGFMDRYNKSIAKDAITEYVQLAKKYGLTPVQLALGFARDRPFMTSSIIGATSMDQLREDLDAFTMTERPLPAEVLEDIEAIFRRYKDPAI* | 1119 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 19332505 | 19342702 | + | Chy12G221820.1 | Chy12g01582 | 239363 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy12g01582 | 1118 | SMART | START_1 | 218 | 443 | IPR002913 | GO:0008289 | |
Chy12g01582 | 1118 | Pfam | START domain | 219 | 442 | IPR002913 | GO:0008289 | |
Chy12g01582 | 1118 | Gene3D | - | 217 | 444 | IPR023393 | - | |
Chy12g01582 | 1118 | SUPERFAMILY | NAD(P)-linked oxidoreductase | 763 | 1114 | IPR036812 | - | |
Chy12g01582 | 1118 | Pfam | Homeodomain | 21 | 76 | IPR001356 | GO:0003677 | |
Chy12g01582 | 1118 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Chy12g01582 | 1118 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 | 6 | 685 | - | - | |
Chy12g01582 | 1118 | SUPERFAMILY | Bet v1-like | 465 | 679 | - | - | |
Chy12g01582 | 1118 | ProSiteProfiles | 'Homeobox' domain profile. | 18 | 78 | IPR001356 | GO:0003677 | |
Chy12g01582 | 1118 | SMART | HOX_1 | 19 | 82 | IPR001356 | GO:0003677 | |
Chy12g01582 | 1118 | CDD | homeodomain | 21 | 79 | IPR001356 | GO:0003677 | |
Chy12g01582 | 1118 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 6 | 685 | IPR042160 | - | |
Chy12g01582 | 1118 | SUPERFAMILY | Homeodomain-like | 7 | 78 | IPR009057 | - | |
Chy12g01582 | 1118 | ProSitePatterns | 'Homeobox' domain signature. | 53 | 76 | IPR017970 | GO:0000981|GO:0006355 | |
Chy12g01582 | 1118 | Pfam | Aldo/keto reductase family | 777 | 1109 | IPR023210 | - | |
Chy12g01582 | 1118 | ProSiteProfiles | START domain profile. | 209 | 446 | IPR002913 | GO:0008289 | |
Chy12g01582 | 1118 | SUPERFAMILY | Bet v1-like | 212 | 444 | - | - | |
Chy12g01582 | 1118 | Gene3D | - | 763 | 1118 | IPR036812 | - | |
Chy12g01582 | 1118 | CDD | START_ArGLABRA2_like | 213 | 442 | - | - | |
Chy12g01582 | 1118 | CDD | AKR_Tas-like | 775 | 1109 | - | - | |
Chy12g01582 | 1118 | Gene3D | - | 9 | 94 | - | - | |
Chy12g01582 | 1118 | PRINTS | Aldo-keto reductase signature | 927 | 944 | IPR020471 | GO:0016491 | |
Chy12g01582 | 1118 | PRINTS | Aldo-keto reductase signature | 879 | 897 | IPR020471 | GO:0016491 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy04g00119 | Chy-Chr4:1065219 | Chy12g01582 | Chy-Chr12:19332505 | 0 | dispersed | |
Chy06g01010 | Chy-Chr6:7677758 | Chy12g01582 | Chy-Chr12:19332505 | 0 | dispersed | |
Chy06g01427 | Chy-Chr6:15041888 | Chy12g01582 | Chy-Chr12:19332505 | 1.07E-86 | dispersed | |
Chy12g01045 | Chy-Chr12:15645774 | Chy12g01582 | Chy-Chr12:19332505 | 0 | dispersed | |
Chy12g01582 | Chy-Chr12:19332505 | Chy11g02014 | Chy-Chr11:25991815 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18917 | PF00248 | Aldo_ket_red | 2.10E-69 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy12g01582 | K09338 | - | csv:101215660 | 1365.9 |