Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01583 ATGGTTTTGACGACAGTTGAAGACTCTGGAGATTCTGTGAACTGCACTTTTGGTTCCAGATATCTCCGCTCACCTCCTCCCAAGTTCAAACTGGGGGAGCAATCTATTCCAAAGGATGCAGCGTATCAGATCATACACGATGAATTGATGCTTGATGGAACTCCCAGGCTGAACTTGGCTTCTTTTGTTACTACTTGGATGGAACCAGAGTGTGACAATCTCATCATGGCTTCTATCAACAAGAACTATGTTGACATGGATGAGTACCCTGTCACTACTGAGCTACAGAATCGCTGTGTCAATATGATTGCTCGCCTCTTTCATGCTCCCATCGGAGATCAAGAAGCTGCAGTTGGTGTGGGGACTGTGGGATCATCAGAGGCTATAATGCTGGCGGGTCTTGCTTTTAAAAGGAAATGGCAACAAAGAAGAAAATCTCAAGGAAAACCCTGTGATAAACCCAATATAGTCACTGGTGCTAATGTCCAGGTGTGCTGGGAGAAGTTTGCAAGGTACTTTGAGGTTGAGCTAAAGGAGGTGAAGCTTTCTGAAGGGTTTTATGTGATGGATCCAGTGAAGGCTGTTGAACTTGTTGATGAGAATACTATTTGTGTTGCGGCAATTTTGGGATCCACTCTGACTGGAGAGTTTGAGGATGTAAAACTCCTTAATGAACTTCTTTCTAAGAAGAATAAGGAAACTGGTTGGGATACCCCAATTCATGTTGATGCAGCCAGTGGAGGGTTTATTGCTCCATTCCTTTATCCTGATCTCGACTGGGATTTTAGATTGCCTTTAGTGAAGAGTATCAATGTCAGTGGTCATAAGTATGGGCTTGTGTACCCTGGTGTAGGATGGGTTGTTTGGAGGAGTAATCAGGATTTGCCTGAGGAGCTTGTTTTCCACATTAACTATCTTGGTTCTGATCAACCCACCTTCACTCTTAATTTCTCAAAAGGTTCTAGTCAGATCATTGCTCAATATTATCAGTTTATTCGGCTTGGATTTGAGGGGTACAAAAACGTGATGGAGAACTGCAGGGAGAATGCAAGAGTGCTGAGAGAGGGAATAGAGAAGATGGGAAGGTTTGAGGTTGTTTCCAAGGATGTTGGAGTGCCCCTGGTAGCCTTCACTCTCAAAGACAGCAGCAAGCACACTGTGTTCGAGATATCGGAGAACCTGAGGAGGTTTGGATGGATTGTGCCAGCTTACACGATGCCAGCAGATGCTCAGCATATTGCGGTGCTGCGAGTGGTGATTAGAGAGGACTTCAGCCGCAGTTTAGCAGAGAGACTGATCTCGGACATTTACAAAGTTTTGAAGGAAGTCGAGGCCCTACCAATTCGGGTGTCTTTGGCAGAAGTGAAAGCTGGAGTTGAAGATGGTGGGAGAGTTAGAAAGCATGTGAAGAAGAGTGAACGGGAGATTGAGGAGGGAATAACTACATATTGGAAACGGCTTGTGGATGGGAAGAGAACTGGCGCTTGCTAG 1491 45.14 MVLTTVEDSGDSVNCTFGSRYLRSPPPKFKLGEQSIPKDAAYQIIHDELMLDGTPRLNLASFVTTWMEPECDNLIMASINKNYVDMDEYPVTTELQNRCVNMIARLFHAPIGDQEAAVGVGTVGSSEAIMLAGLAFKRKWQQRRKSQGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGFYVMDPVKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLSKKNKETGWDTPIHVDAASGGFIAPFLYPDLDWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSNQDLPEELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCRENARVLREGIEKMGRFEVVSKDVGVPLVAFTLKDSSKHTVFEISENLRRFGWIVPAYTMPADAQHIAVLRVVIREDFSRSLAERLISDIYKVLKEVEALPIRVSLAEVKAGVEDGGRVRKHVKKSEREIEEGITTYWKRLVDGKRTGAC* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19343793 19346064 + Chy12G221830.1 Chy12g01583 239364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01583 496 Gene3D - 360 447 - -
Chy12g01583 496 PANTHER GLUTAMATE DECARBOXYLASE 1 496 - -
Chy12g01583 496 Gene3D - 65 359 IPR015421 GO:0003824
Chy12g01583 496 CDD DOPA_deC_like 58 436 - -
Chy12g01583 496 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 380 IPR002129 GO:0016830|GO:0019752|GO:0030170
Chy12g01583 496 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 443 IPR010107 GO:0004351|GO:0006536|GO:0030170
Chy12g01583 496 PANTHER GLUTAMATE DECARBOXYLASE 1 496 IPR010107 GO:0004351|GO:0006536|GO:0030170
Chy12g01583 496 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Chy12g01583 496 Gene3D - 1 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00458 Chy-Chr9:4070855 Chy12g01583 Chy-Chr12:19343793 0 dispersed
Chy09g00459 Chy-Chr9:4089362 Chy12g01583 Chy-Chr12:19343793 0 dispersed
Chy11g01799 Chy-Chr11:24366657 Chy12g01583 Chy-Chr12:19343793 5.63E-20 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01583 K01580 - csv:101210903 982.245