Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01585 ATGCCCTTTTCCTCTTTGACTATATCCGGGAATTTCCCCGCCTCCATGAAGTCCTACACTCAGCCACGAGCAATAATGATGCCACCCAATGGTATTTGCAGTCCCTGCAATGCGAACCTTAACCTAGCACCTAAATTTCGACTACTTTCTCTATCTGCAATTCCGAACGTGTTACATTTTCCAAATCCACCTTCTCTCTACCTCGGTTCCAGCTCAAACTATTCCGGATTTTCCCGCTTGGTTGGTCCTCCAAGGAAAATGGATTCTCAAACCAGAAGTCGCTTTACATTTGTAAATTGTGGTGCAGGAGCAACAAGGGCCGCCGCTACTGATCACTATTCGACGTTGAATGTTAGCCGGAATGCAACAATGCAGGATATAAAAAACTCATATAAGAAGCTCGCTCGTAAGTACCATCCAGATGTGAACAAGGATCCTGGATCTGAAGACAGATTCAAAGAGATAAGTGCTGCATATGAGGTTCTATCAGATGATGAGAAAAGATCTTTATATGATCAACTCAGCGAGGCAGGTGTGCATGGAGACTATGGTGTAATGAGTCGTGATTCACGAGGGGTCGATCCGTTTGAAATTTTTGATGCATTCTTTGGAGGATCAGATGGAATTTTTAGAGAAAGTGATGGAATTGGAGGCATTAATTTAAATCAGAGGAGTGAAAAAATTCAAAGTCTTGATATTCATTATGCCTTGCACCTAAGCTTTGAAGAATCAGTTTTCGGAGGAGAGAAGACAATTCAATTTTCTTTTTTTGAGACATGTGAAAATTGTGATGGTACGGGTGCTAAATCAAATAGTTGCATAAAATTGTGTGCTAACTGTCATGGAAGAGGAGGAGTGGTCAAAACTCAGAAAACGCCATTTGGAATGATGTCTCAGGTGTCCATATGTTCTGAATGTGGCGGTGATGGTAAGAAAATAACAGAGTTATGTCGAAGCTGTGGTGGCGGTGGTCAACTGCAATCAATTAAAAAAATGAACTTAGTAATACCACCAGGTGTCAGCGATGGAGCCACGATGAAAATTCAAAGAGAGGGTAGTTCTGATATGAAAAGGGGAATGACCGGAGACCTGTATATCATGCTTCATATAGGTGAAAAGCATGGAATTTGGAGAGATGGTCTTCATCTATACTCCAACATTAGCATTGACTATACAGAGGCAATATTAGGTACCACTGTGAAGGTTGAAACTGTTGAAGGCTTGAAAGACCTCCAAATACCTGCTGGTGTTCAGCCAGGGGATAGAGTTAGATTGTCATGCATGGGGATTCCAGATATAAATAAACCTTCCGTTCGTGGTGATCATCTGTTTATCGTGAATGTTCAGATTCCGAAGCGCATGAGCGACTCAGAACGCACAAAAATTAAAGAATTGGCTTTACTCAAGGCATCTACTAAGAATGATGAGGTTTACACTCATGGGATGCCTCTAGGAACCTTTGATAAATATACAGATGAAAATCAAGGAAACCATGCTTCCAGCCAGGCAATTAAGCGCCACAGCCTGGACCACCAACGCAAAAGTAGAGCAAAGAATCCAAGAAGAGAACTCTTCGATTATACACATCCCCTATTCAGCTTGAAATTGGTTGAGACAGCCTCGAGAAGGATTTGCTTCGATTGGCATAGAGATCTCAAAACCGTCTTGTTGGAGGCCTTTGAAGTTGCATTCTTCATACACAGACTCGCTGATAATGGTTGTAATAGTAACTTCAGTCTTCTTGATGGGGAGAAATTACTTCTGGACACTTCTGCGCAGAAAATACCATTGACTCTTGGTGGTGAAGGTAGAAGTTTCCAGGGTTTTGGAAGTTTCAAATGGAAGGGTTTTGGCAAAAACAAAAGCCACCAAAGGGCTTCGAGGATAATCATAAGTATGCCTCAACATGTCACGCTTTACCTTTCTCTTTGGCATTTGGCCTTCCTTTTCGTCATTCTCGGTGTTAAACCATATCTGAGTTCTGATCGAGCTTCTTTTCTGGCTCTTCGTATTGCTATGGGTGCTCGAACCGCTGAGCTATGGAATGCAACCGACGAAAGTCCTTACTCATGGAATGGGGTAGAATGCGATGGAAGTCGAGTTACAGTGCTTCGATTACCGAGCATTTCTCTCTCAGGCAAAATACCCACTGACATTTTTGGGAAATTTAAACAATCTTCACACTCTAAGTCTCAGGGTAATGGATTTTCTGGTCAAATTCCCGAGTTTATTTTCCAATTTCATAACCTTGTTCGCCTCAACTTGGCTTCCAACAATTTCTCCGACGTCCTTGCTCCGGATTTCGACCGACTTCAGCGGTTGAAGACTCTATTCCTTGAGAATAATCGATTTATTGGTTCGATGCCGGCATTTAAGCTTCCTGTCCTCAAGCAGTTCAATGTTTCCAACAATTTTCTCAACGGATCTGTTCCTCGTCGTTTCCAGTCATTTCCCTCCACGGCCTTGTTAGGTAATCAACTTTGCGGGCGTCCCCTTGAGACTTGCTCTGGAAATATTGTGGTGCCACTCACAGTAGATATTGACATTATGAGAACAGGAGAACGAAAAAACTATATGGGTTGTCATGGGTGGGATAGTGATAGGATCCGTATTGAGTTTCATTATGTTTTGTATGATTTTCATGCTTTCTTGCCAGAGTAA 2661 42.24 MPFSSLTISGNFPASMKSYTQPRAIMMPPNGICSPCNANLNLAPKFRLLSLSAIPNVLHFPNPPSLYLGSSSNYSGFSRLVGPPRKMDSQTRSRFTFVNCGAGATRAAATDHYSTLNVSRNATMQDIKNSYKKLARKYHPDVNKDPGSEDRFKEISAAYEVLSDDEKRSLYDQLSEAGVHGDYGVMSRDSRGVDPFEIFDAFFGGSDGIFRESDGIGGINLNQRSEKIQSLDIHYALHLSFEESVFGGEKTIQFSFFETCENCDGTGAKSNSCIKLCANCHGRGGVVKTQKTPFGMMSQVSICSECGGDGKKITELCRSCGGGGQLQSIKKMNLVIPPGVSDGATMKIQREGSSDMKRGMTGDLYIMLHIGEKHGIWRDGLHLYSNISIDYTEAILGTTVKVETVEGLKDLQIPAGVQPGDRVRLSCMGIPDINKPSVRGDHLFIVNVQIPKRMSDSERTKIKELALLKASTKNDEVYTHGMPLGTFDKYTDENQGNHASSQAIKRHSLDHQRKSRAKNPRRELFDYTHPLFSLKLVETASRRICFDWHRDLKTVLLEAFEVAFFIHRLADNGCNSNFSLLDGEKLLLDTSAQKIPLTLGGEGRSFQGFGSFKWKGFGKNKSHQRASRIIISMPQHVTLYLSLWHLAFLFVILGVKPYLSSDRASFLALRIAMGARTAELWNATDESPYSWNGVECDGSRVTVLRLPSISLSGKIPTDIFGKFKQSSHSKSQGNGFSGQIPEFIFQFHNLVRLNLASNNFSDVLAPDFDRLQRLKTLFLENNRFIGSMPAFKLPVLKQFNVSNNFLNGSVPRRFQSFPSTALLGNQLCGRPLETCSGNIVVPLTVDIDIMRTGERKNYMGCHGWDSDRIRIEFHYVLYDFHAFLPE* 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19351324 19388350 + Chy12G221850.1 Chy12g01585 239366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01585 886 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 247 326 IPR036410 -
Chy12g01585 886 ProSitePatterns Nt-dnaJ domain signature. 152 171 IPR018253 -
Chy12g01585 886 Gene3D Ribonuclease Inhibitor 666 836 IPR032675 -
Chy12g01585 886 Pfam DnaJ C terminal domain 233 451 IPR002939 -
Chy12g01585 886 Gene3D - 232 366 - -
Chy12g01585 886 ProSiteProfiles Zinc finger CR-type profile. 247 329 IPR001305 GO:0031072|GO:0051082
Chy12g01585 886 SMART dnaj_3 110 167 IPR001623 -
Chy12g01585 886 Pfam DnaJ domain 111 172 IPR001623 -
Chy12g01585 886 Gene3D - 260 324 - -
Chy12g01585 886 Gene3D - 374 481 - -
Chy12g01585 886 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 116 476 - -
Chy12g01585 886 SUPERFAMILY HSP40/DnaJ peptide-binding domain 232 370 IPR008971 GO:0006457|GO:0051082
Chy12g01585 886 MobiDBLite consensus disorder prediction 489 520 - -
Chy12g01585 886 CDD DnaJ 111 164 IPR001623 -
Chy12g01585 886 Hamap Chaperone protein DnaJ [dnaJ]. 108 493 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Chy12g01585 886 SUPERFAMILY HSP40/DnaJ peptide-binding domain 378 459 IPR008971 GO:0006457|GO:0051082
Chy12g01585 886 CDD DnaJ_C 232 454 - -
Chy12g01585 886 Pfam DnaJ central domain 260 323 IPR001305 GO:0031072|GO:0051082
Chy12g01585 886 SUPERFAMILY Chaperone J-domain 107 211 IPR036869 -
Chy12g01585 886 PRINTS DnaJ domain signature 167 186 IPR001623 -
Chy12g01585 886 PRINTS DnaJ domain signature 113 131 IPR001623 -
Chy12g01585 886 PRINTS DnaJ domain signature 131 146 IPR001623 -
Chy12g01585 886 PRINTS DnaJ domain signature 147 167 IPR001623 -
Chy12g01585 886 Gene3D DnaJ domain 108 212 IPR036869 -
Chy12g01585 886 PANTHER EXPRESSED PROTEIN 116 476 - -
Chy12g01585 886 ProSiteProfiles dnaJ domain profile. 111 175 IPR001623 -
Chy12g01585 886 SUPERFAMILY L domain-like 682 829 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01585 K03686 dnaJ; molecular chaperone DnaJ - csv:101215426 962.985
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00844 Chy-Chr3:11635786 Chy12g01585 Chy-Chr12:19351324 1.87E-11 dispersed
Chy07g01569 Chy-Chr7:19909335 Chy12g01585 Chy-Chr12:19351324 3.52E-119 dispersed
Chy11g01512 Chy-Chr11:21768709 Chy12g01585 Chy-Chr12:19351324 8.77E-16 dispersed
Chy12g01585 Chy-Chr12:19351324 Chy01g01887 Chy-Chr1:24202350 5.17E-56 dispersed
Chy12g01585 Chy-Chr12:19351324 Chy03g01336 Chy-Chr3:16323090 2.09E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g173 . . Bda06g00866 . . . . Bma12g01283 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy12g01585 . . Blo15g00020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007152 1 1 1 1 0 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 2 1 1 1 3 1 0 1 0 1 37