Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy12g01586 | ATGACAACCCTTGATAATATACAAAGAGAAAAAGTGACTTACGAAAATCCTCACTCCATAGCTGCTACTACGGCAATGGTACAGAATAAGAAAGAGGAAACAAATGATGACATCGCTGTAGTAAAAAAGTTTGTATTCTTCGACAATACAGCTAGGGTTTTTGATTTGGAGGATTTGTTGAGGGCTTCAGCAGAAGTGTTGGGCAAGGGAACCTTTGGAACAGCTTACAAAGCAGTCTTGGAGATTGGACCTGTGGTCGCTGTAAAGAGATTGATGGATGTGACCATTTCTAAGAGAGAATTCAAGGAGAAAATTGAAGCAGTTGGAGCAATGGATCATAAAAATTTGGTTCCTCTCAAAGCATATTATTTCAGTGTAGATGAGAAGCTTCTGGTTTTTGATTACATGGCCATGGGAAGCTTATCCGCACTTTTGCACGGTAACAAAAGATGTGGTAGGACACCATTGAACTGGGAAATGAGACGTGGCATTGCATCCGGAGTAGCTCGTGGCATCAAGTACTTACATTGTCAAGGCCCAAATGTTTCTCATGGAAACATAAAGTCTTCCAACATATTGCTTGATCCGTATGATGCCCGAGTCTCAGATTTCGGCCTAGCGCAACTGGTTGGCCCAGCCTCCAGTCCTAACAGAGTGGCGGGGTATCGTGCACCAGATGTAATAGATTCTCGGAAAGTATCACATAAGGCAAATGTTTACAGCTTCGGCGTATTGCTGTTGGAGCTGTTGACAGGAAAAGCTCCAAGTCATAGGGTGTTAAGCGAGGAAGGGGTGGATCTACCGAGATGGGTGCAGTCAGTAGTGCAAGAAGAGTGGAAGTTGAAAGTTTTCGATGTTGAACTACTAAAGTACGAGAGTGTTGAGGAGGAGATTGTTCAAATATTGGAGCTGGCTTTAGATTGTGCTACTCAACATCTAGATAGACGGCCTTCAATGTTTGAAGTATTGAGTCGCATTGAGGAGATATTATGCCCTTACAATCCAATTCAATAA | 1014 | 42.7 | MTTLDNIQREKVTYENPHSIAATTAMVQNKKEETNDDIAVVKKFVFFDNTARVFDLEDLLRASAEVLGKGTFGTAYKAVLEIGPVVAVKRLMDVTISKREFKEKIEAVGAMDHKNLVPLKAYYFSVDEKLLVFDYMAMGSLSALLHGNKRCGRTPLNWEMRRGIASGVARGIKYLHCQGPNVSHGNIKSSNILLDPYDARVSDFGLAQLVGPASSPNRVAGYRAPDVIDSRKVSHKANVYSFGVLLLELLTGKAPSHRVLSEEGVDLPRWVQSVVQEEWKLKVFDVELLKYESVEEEIVQILELALDCATQHLDRRPSMFEVLSRIEEILCPYNPIQ* | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 19388379 | 19389869 | + | Chy12G221860.1 | Chy12g01586 | 239367 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy12g01586 | 337 | ProSitePatterns | Protein kinases ATP-binding region signature. | 67 | 89 | IPR017441 | GO:0005524 | |
Chy12g01586 | 337 | Pfam | Protein kinase domain | 64 | 323 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Chy12g01586 | 337 | SUPERFAMILY | Protein kinase-like (PK-like) | 65 | 331 | IPR011009 | - | |
Chy12g01586 | 337 | ProSiteProfiles | Protein kinase domain profile. | 61 | 330 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Chy12g01586 | 337 | Gene3D | Phosphorylase Kinase; domain 1 | 22 | 135 | - | - | |
Chy12g01586 | 337 | PANTHER | INACTIVE RECEPTOR KINASE-RELATED | 18 | 329 | - | - | |
Chy12g01586 | 337 | Gene3D | Transferase(Phosphotransferase) domain 1 | 136 | 333 | - | - | |
Chy12g01586 | 337 | PANTHER | OS05G0588300 PROTEIN | 18 | 329 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy11g01173 | Chy-Chr11:17853820 | Chy12g01586 | Chy-Chr12:19388379 | 4.51E-108 | dispersed | |
Chy12g01586 | Chy-Chr12:19388379 | Chy10g01166 | Chy-Chr10:16515367 | 1.35E-101 | dispersed | |
Chy12g01586 | Chy-Chr12:19388379 | Chy06g01272 | Chy-Chr6:11694990 | 8.96E-97 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
71656 | PF00069 | Pkinase | 3.60E-36 | CL0016 | Chy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy12g01586 | - | - | csv:101215185 | 619.772 |