Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01593 AATTATACTGGTGACCGTTTAAATTTTGGTTTGGCTGCTGAGCAAGCAAAATCAGAAGGATATAAAGTAGAGACTGTTATTGTTGGGGATGATTGTGCCTTGCCACCACCTCGAGGTATAACTGGCCGGAGAGGATTGGCTGGGACTATACTTGTTCACAAGTTTAATGTTTTAGAATAG 180 41.11 NYTGDRLNFGLAAEQAKSEGYKVETVIVGDDCALPPPRGITGRRGLAGTILVHKFNVLE* 60
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19494960 19495772 + Chy12G221930.1 Chy12g01593 239374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01593 59 Gene3D Dihydroxyacetone kinase; domain 1 1 57 - -
Chy12g01593 59 Pfam Dak1 domain 1 55 IPR004006 GO:0004371|GO:0006071
Chy12g01593 59 PANTHER TRIOKINASE/FMN CYCLASE 1 54 - -
Chy12g01593 59 PANTHER TRIOKINASE/FMN CYCLASE 1 54 - -
Chy12g01593 59 SUPERFAMILY DAK1/DegV-like 1 55 - -
Chy12g01593 59 ProSiteProfiles DhaK domain profile. 1 59 IPR004006 GO:0004371|GO:0006071
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01593 - - - csv:101209672 113.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy02g02643 Chy12g01593 CCT
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g895 . . . . . . . Bma12g01071 . . . Cma11g00050 . . . . Cpe04g01602 Bhi02g00563 . . . . . . Cla06g01725 Cam06g1915 Cec06g1965 Cco06g1969 Clacu06g1871 Cmu06g1813 Cre06g2628 . . . . . . Chy12g01593 . . . . . . . . . . . Cmo11g00052 . . . . . . . . . . . . . . . . . . . . Lsi06g01620 . Chy02g02643 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003104 1 8 1 1 2 1 1 3 2 3 1 1 1 1 1 1 2 1 1 3 1 1 1 2 3 1 1 2 3 1 52