Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01597 ATGATAGGCAATACGGCAACCTCGGCCTCCCCACTTCTTCCTAATTCTTCCGAACCATACTCTTGCTTAGAAAATGGAAACAACAACACCAACAAGAGGAAAAGAAGGCCTGCAGGGACCCCAGATCCGGATGCAGAGGTGGTGTCTCTGTCCCCAAAAACACTACTAGAATCGGACCGGTATGTGTGCGAGATTTGCAACCAAGGGTTCCAGAGGGATCAGAACCTGCAGATGCATAGGCGGCGGCATAAGGTTCCTTGGAAGCTGCTGAAGAGGGAAAGTCCTGTTGTGCGGAAGAGAGTTTTCGTTTGTCCGGAACCCACCTGCCTGCATCACGATCCTTGCCACGCCCTCGGTGACCTCGTTGGAATCAAGAAGCACTTCCGAAGGAAACACAGCAACCACAAACAGTGGGTTTGTGAAAAATGCTCCAAGGGCTACGCGGTTCAGTCCGATTATAAGGCTCATCTCAAAACCTGTGGCACTCGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCACCAAGATGCTTGCAATATGGGGCATCTCCGGCAAGAATCACAAGCCCAGCCCGCATGTCTGTCCAGAACGGCTTCGAGTCCAAGCCCCTCCAGCGACACTAACTTCAGCAGCACTCCCGCTCCCAGCAATAATTGGCCTGCTCTAGTAACGCCACCACCCACATTGAAGCCCGTGGATGCCATCTTCTTAACCCCCACGGGGGACCCCAACAACAACAACAATAGCGATCACAATTTAGACCTCAAACTGTCAACTGCATCAAATGGTGTGGAAGGGAGGAACAATTATAATAATAATAAGAAGGGTTCTTCAACGAAACTTGAGCTGTCGATGGGATCATTTGATTTTGAGGACGAGAAGAAAAAGATGTTGAAATTGGATGATGGTGGGGCTGGGGATGTTAGAGAAGAAGCACGGGAGGAGCTAAGGGTGGCGATGGCAGAGAAGGCATATGCGGAGGAAGCAAGGAAGCAGGCAAAGAGGCAAATAGAAATGGCAGAGGAAGAATTCGGGAATGCAAAGAGGATGAGGCAACAGGCACAGGCTGAATTAGATAAGGCCACAGCCCTTAAACAAGCAGCAATCAAGCAGATAAACTCAACCATTCTTGAGATCACTTGTCAAGCTTGCCAGAAGCAGTTTCAAGCCAAAACTAAAACTAAAACTAAAACTACTACCACTACCACGACCACGAGTGCAGCCACTGATCATGACAATTATTCCTCCGTAGCATTCAGTTATGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAATCAACTATTATACCTAAACCGCCCAACAATTAA 1365 48.79 MIGNTATSASPLLPNSSEPYSCLENGNNNTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQAQPACLSRTASSPSPSSDTNFSSTPAPSNNWPALVTPPPTLKPVDAIFLTPTGDPNNNNNSDHNLDLKLSTASNGVEGRNNYNNNKKGSSTKLELSMGSFDFEDEKKKMLKLDDGGAGDVREEAREELRVAMAEKAYAEEARKQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQACQKQFQAKTKTKTKTTTTTTTTSAATDHDNYSSVAFSYVSSVITTEGEVEKDQSTIIPKPPNN* 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19527270 19529361 - Chy12G221970.1 Chy12g01597 239378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01597 454 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Chy12g01597 454 MobiDBLite consensus disorder prediction 247 262 - -
Chy12g01597 454 CDD ATP-synt_Fo_b 299 394 - -
Chy12g01597 454 MobiDBLite consensus disorder prediction 197 262 - -
Chy12g01597 454 MobiDBLite consensus disorder prediction 1 48 - -
Chy12g01597 454 Gene3D Classic Zinc Finger 49 134 - -
Chy12g01597 454 MobiDBLite consensus disorder prediction 1 28 - -
Chy12g01597 454 MobiDBLite consensus disorder prediction 398 417 - -
Chy12g01597 454 PANTHER OS03G0310200 PROTEIN 14 441 IPR039288 GO:0009630
Chy12g01597 454 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Chy12g01597 454 SMART c2h2final6 102 132 IPR013087 -
Chy12g01597 454 SMART c2h2final6 138 165 IPR013087 -
Chy12g01597 454 SMART c2h2final6 61 83 IPR013087 -
Chy12g01597 454 Coils Coil 317 379 - -
Chy12g01597 454 SUPERFAMILY beta-beta-alpha zinc fingers 58 84 IPR036236 -
Chy12g01597 454 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 14 441 - -
Chy12g01597 454 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Chy12g01597 454 MobiDBLite consensus disorder prediction 197 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02663 Chy-Chr2:29640021 Chy12g01597 Chy-Chr12:19527270 3.40E-17 dispersed
Chy12g01375 Chy-Chr12:17952767 Chy12g01597 Chy-Chr12:19527270 7.27E-169 dispersed
Chy12g01597 Chy-Chr12:19527270 Chy02g00663 Chy-Chr2:4027016 2.02E-73 dispersed
Chy12g01597 Chy-Chr12:19527270 Chy03g01477 Chy-Chr3:17237665 1.66E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18919 PF00096 zf-C2H2 0.0043 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01597 K25871 - csv:101209426 801.201