Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy12g01600 ATGGTCGATACAAATTCAATCGATGTGATTCTGGAATTCTTAAAACGGAATCAGTTCACAAGAGCCGAGGCAGCATTGCGGAGTGAGCTCAATAACCACCCAGATTTAAATGGGCTTCTCAAGAAACTTACCCTTGAAGAGAAGGGTTTAGGGGACACATTGGAGGTAGAAAATGGGGACAAACCAATGGTGGAGACCGGACTGTCAGGTCCCCAAGTTAATCTTGATGTTTCCAAGGAACTTATTGTGAAGGAAATAGAATGTGGAAGTGGTAGAAATGGTGCTGAAAGCAAATGGAAAAATGATTATACGTTTGGAGAGAGGAGTAAATCAAATGATGCAGTTGGAACAAGTGACAGGAACTTCACCTTTTCTCAAGGTTCAGAGGATACTGTGCTCGATTTATATTCATGGAAAGTAAAATCTAGCAACGGTCTGGTTGGAGTCACTCAGAATGATGGGGTTAAAGATGCAAATAACTTTCCAGAGCTTCAGGTATCTGAAAAATCCAGATATCATACTGGTGAAGTTTCTGAATCAAGAAAAGCCAATTTCAAAACAGGTGAAAGTGTGATTTCATCTAGTGAAAAGAGAGACTTGTGGCATGGAAATGCTAGCACAGCGAATGTAGAAACTAAATATGACGTTGCCCAAAAATCTGAACCAAAGGAACTTGATCAGCAGGTTAAGGCTACTTCTGCATACATGAAAGAAAACACTTCAGATTTGTCATGGTATAAAGGTAAAGATTCTTCATCATCCGATTTGTTGATGGATTGCTCTGTGAAGACCGTTTTTCCATTTTCCACGGGAGATGTGTCAAACAGTTATGATAGCACGAGTTGTTCTGACAAATCAGATGCAAAAAGAAAAGCAGAGGTGAATGATATAAGGGCAACGATTAAAGAGCAAGTAGAAGAGGTGGGAAGAGCTTTATATTTTGGTAGATCTCAGGACACTGCTGATCAAAAAACTCTAGGCAGTTTAAGTTTAGCTCTCGTGGCTGAAAGTCAGAAGGAGGAATTGCCTCGATTGCCACCCGTCAAACTGAAGTCTGAAGACAAGCCTTTGAGTCTTAATTGGAAGGAAAACTTCGAACGTGATGGACAGATTGCAAAATTTACTAGCATCGACAGCTCCCTTCTTATAGGGTCTTATCTAGATGTTCCTGTCGGGCAAGAAATTTCATCAGCTGGTGGAAAGAGGAACACTGGTGGCAGTTGGTTGTCTGTAAGTCAGGGAATTGCAGAAGATACATCTGATTTAGTCTCTGGTTTTGCCACTGTTGGTGATGGCTTAAGTGAGTCTCTGGACTATCCAAATGAGTATTGGGACTCTGATGAATATGACGACGACGATGATGTTGGATACATGCGACAACCTATTGAGGATGAGACTTGGTTTTTGGCCCATGAGATTGATTATCCAAGTGACAATGAAAAAGGAACAGGGCATGGAAGTGTCCCAGATATGCCGGATAGAGCTCAAACCAAATGTGAGGATGATGATCAGTCTTTTGCTGAGGAGGACTCTTATTTTTCTGGTGAACAATATTTTCAATCAAAACATATCCAGCCAGTCACAACCTCAGAGGATCCTATGGGGTTGACTGTGACGGAAATGTATGGGAGGACCAATGAAAATGATTTAATGGCTCAATATGATGGGCAACTGATGGATGAAGAGGAATTAAACTTGATGCGCGCTGAACCTGTGTGGCAAGGTTTTGTTACCCAGACTAATGAGCTGATAATGTTAGGGGATGGGAAAGTTGTAAATGAGTCTAGAAAATCAAGACTTGATGATATTTGTGTGGATGACGATCAGCACGGTTCAGTTAGATCGATTGGTGTAGGGATCAATAGTGATGTGGCAGATATTGGCAGTGAAGTACGTGAAAGCTTGGTGGGAGGCAGCAGTGAGGGGGATTTAGAATACTTTCATGACCATGAAGTTGGAATTGGTGGCTCCAGATTTCCTTATAATGATTCAGACAAAAAATATTTGGATAGATTAAACAAGGATAAGAAGAGCTCTAGTAAACAGCAACCAAATAAACAAGCATCTAGGAATGATACTAGCACGTGCTTTCAGAAACAGAATCCAAGTGATGGGGGATTTTCATTTCCCCCACCCTTGAGAGATCGACAATTGGTTCAGGCATGTTCAAGCAAGTCTTTGTGGTCTAACAACTCTAACAGAGTGATTAATGATGAAAATGATGTTTCTTTAAATGCTTTGATGCAATCTAACAACGATATGCTTGCATCTTGGGGGCCAAAAGATTCTGATTCTTCACCTGATAATAGTCTTAGGGATGAAAATAATGCTAATGCTGTAAGGTTCGGGAGTTCAAGTCCTTCCATGCTTTCCAACTATCAATACACGGAAAAAGCGCCCAAGATAGAAAATGATGATAAAATCAGTAGCGTAAGGGAAGAAGATCCTGTGGCATCACTTGAGGATGAAGAGGCAGCTGCCGTACAAGAGCAAGTTAGGCAGATAAGGTCGCAGGAGGAGGAATTTGAGTCTTTCAACCTCAAAATTGTTCATCGTAAAAACAGAACTGGTTTTGAGGAGGACAAGAATTTCCATGTAGTATTAAATTCTGTGATAGCTGGACGCTACCATGTCACTGAATATCTTGGGTCAGCTGCATTCAGCAAGGCTATACAAGCACATGATCTGCACACAGGCATGGATGTGTGTATAAAGATCATAAAGAACAACAAGGATTTTTTTGATCAGAGCCTTGACGAAATAAAGCTTCTAAAATATGTTAATAAGCACGACCCAGCGGACAAATACCACATCCTACGACTATATGATTACTTCTACTATCGGGAGCATTTGTTAATTGTATGTGAACTTCTGAAGGCAAACCTGTATGAGTTTCACAAATTTAATAGAGAATCAGGAGGAGAAGTCTACTTCACCATGCCAAGATTGCAGTCAATTACAATTCAATGCTTGGAGGCACTTCAGTTTTTACATGGTCTTGATCTTATACATTGCGACTTAAAGCCTGAAAATATATTGGTGAAAAGTTACAGTAGATGTGAGGTGAAAGTTATTGATCTTGGAAGCAGTTGTTTTGAGACAGATCATCTCTGCTCCTATGTTCAATCCCGATCCTATCGTGCCCCAGAGGTTATCTTGGGACTTCCATATGACAAGAAGATAGACATATGGTCTCTTGGCTGTATCTTGGCAGAACTTTGTACTGGCAATGTTCTGTTCCAAAATGATTCACCTGCTACATTACTTGCACGTGTGATTGGAATTATAAGTCCTATTGATCAAAGTATGCTTGCTAAGGGACGAGATACATATAAGTACTTTACCAAGAATCATATGCTGTATGAACGAAATCAGGAAAGCAATAGACTGGAGTATCTAATACCGAAAAAGACATCATTAAGGCACCGATTACCAATGGGGGATCAAGGGTTCATTGACTTCGTTTCTCATCTGCTTGAGATAAATCCCAAGAAACGCCCTTCTGCATCTGAGGCACTGAAACACCCATGGCTATCTTACCCTTACGAACCCATTTCTTCGTGA 3564 40.66 MVDTNSIDVILEFLKRNQFTRAEAALRSELNNHPDLNGLLKKLTLEEKGLGDTLEVENGDKPMVETGLSGPQVNLDVSKELIVKEIECGSGRNGAESKWKNDYTFGERSKSNDAVGTSDRNFTFSQGSEDTVLDLYSWKVKSSNGLVGVTQNDGVKDANNFPELQVSEKSRYHTGEVSESRKANFKTGESVISSSEKRDLWHGNASTANVETKYDVAQKSEPKELDQQVKATSAYMKENTSDLSWYKGKDSSSSDLLMDCSVKTVFPFSTGDVSNSYDSTSCSDKSDAKRKAEVNDIRATIKEQVEEVGRALYFGRSQDTADQKTLGSLSLALVAESQKEELPRLPPVKLKSEDKPLSLNWKENFERDGQIAKFTSIDSSLLIGSYLDVPVGQEISSAGGKRNTGGSWLSVSQGIAEDTSDLVSGFATVGDGLSESLDYPNEYWDSDEYDDDDDVGYMRQPIEDETWFLAHEIDYPSDNEKGTGHGSVPDMPDRAQTKCEDDDQSFAEEDSYFSGEQYFQSKHIQPVTTSEDPMGLTVTEMYGRTNENDLMAQYDGQLMDEEELNLMRAEPVWQGFVTQTNELIMLGDGKVVNESRKSRLDDICVDDDQHGSVRSIGVGINSDVADIGSEVRESLVGGSSEGDLEYFHDHEVGIGGSRFPYNDSDKKYLDRLNKDKKSSSKQQPNKQASRNDTSTCFQKQNPSDGGFSFPPPLRDRQLVQACSSKSLWSNNSNRVINDENDVSLNALMQSNNDMLASWGPKDSDSSPDNSLRDENNANAVRFGSSSPSMLSNYQYTEKAPKIENDDKISSVREEDPVASLEDEEAAAVQEQVRQIRSQEEEFESFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCIKIIKNNKDFFDQSLDEIKLLKYVNKHDPADKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLDLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIISPIDQSMLAKGRDTYKYFTKNHMLYERNQESNRLEYLIPKKTSLRHRLPMGDQGFIDFVSHLLEINPKKRPSASEALKHPWLSYPYEPISS* 1188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19550025 19557158 + Chy12G222000.1 Chy12g01600 239381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy12g01600 1187 Coils Coil 828 848 - -
Chy12g01600 1187 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1002 1014 IPR008271 GO:0004672|GO:0006468
Chy12g01600 1187 MobiDBLite consensus disorder prediction 170 189 - -
Chy12g01600 1187 PANTHER - 2 1185 - -
Chy12g01600 1187 ProSiteProfiles Protein kinase domain profile. 876 1178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01600 1187 MobiDBLite consensus disorder prediction 673 714 - -
Chy12g01600 1187 PANTHER DUAL SPECIFICITY PROTEIN KINASE 2 1185 - -
Chy12g01600 1187 MobiDBLite consensus disorder prediction 754 822 - -
Chy12g01600 1187 MobiDBLite consensus disorder prediction 682 705 - -
Chy12g01600 1187 Gene3D Phosphorylase Kinase; domain 1 870 957 - -
Chy12g01600 1187 MobiDBLite consensus disorder prediction 799 816 - -
Chy12g01600 1187 SUPERFAMILY Protein kinase-like (PK-like) 865 1180 IPR011009 -
Chy12g01600 1187 CDD PKc_DYRK_like 876 1178 - -
Chy12g01600 1187 Pfam Protein kinase domain 876 1178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy12g01600 1187 MobiDBLite consensus disorder prediction 754 798 - -
Chy12g01600 1187 Gene3D Transferase(Phosphotransferase) domain 1 930 1178 - -
Chy12g01600 1187 SMART serkin_6 876 1178 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy12g01600 - - - csv:101208935 2290.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00189 Chy-Chr3:1725993 Chy12g01600 Chy-Chr12:19550025 5.90E-177 dispersed
Chy09g00937 Chy-Chr9:12126112 Chy12g01600 Chy-Chr12:19550025 7.66E-54 dispersed
Chy10g01135 Chy-Chr10:16306056 Chy12g01600 Chy-Chr12:19550025 4.79E-45 dispersed
Chy12g01216 Chy-Chr12:16909926 Chy12g01600 Chy-Chr12:19550025 7.20E-43 dispersed
Chy12g01600 Chy-Chr12:19550025 Chy07g01000 Chy-Chr7:14709450 3.65E-30 dispersed
Chy12g01600 Chy-Chr12:19550025 Chy02g02318 Chy-Chr2:27194904 2.55E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g109 . . . . . . . . . Cmo18g00217 . . . . . . . . . . . . . . . . . . . . . Cone2ag0974 . . . Lsi02g00501 Csa01g00962 Chy12g01600 Cme12g01778 . . . Bda14g01363 . Bpe15g00218 . . . . . . Cma18g00109 . Car18g00100 Cpe09g01082 . . . . . . . . . . . . . . . . Csa01g00489 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005079 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71658 PF00069 Pkinase 1.30E-50 CL0016 Chy PK