Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00001 ATGCCACCTGCCCTAGTTGTCGAGTCCGTCGAGTCCGTCGAGCCTGAGAAGGAGAGCCACCAACTCTCGTCTGCAGCCGAATTGGAGAAGAAGCTTGAGTGGGATGACAAACCGATTGTTGAAGACGTGGATGACGACGAGGATGATGACGAGGATGATGAAGATGACGGAAAGGAGAACGGGGCTCTTGGTGGGTCTCCACTCCATATCTCTTTTTCTTGGAGCCTAACCAAAATTCCCTCTCCTCCCCTCTCCTTGTTTTCTGCCACTTCAAATGTCTTCGTTCTTAACCCTGGATTCCTTGCTGTTCAATCTTTTGTTATTAGTTTTCATGAATTAGCTAAGATGGAGATGGTTTTCTGTAAATCAATGATTTTCATGCTCCGCTATCAATTTAAACTTAGACAGTTTTGCATGAGGAAAGAATCGGTTCTGCAATTTTTGTTAGGGAGGCACAGTTTAAGGGGTTCAAATGAGAGTTCAAAGCAGAGCCGGAGTGAAAAGAAGAGTCGCAAGGCTATGCTGAAGCTGGGTATGAAACCAGTTACTGGGGTTAGCAGAGTAACAATTAAAAGAACAAAAAACATTCTGTTTTTCATATCAAAACCTGATGTGTTCAAAAGTCCAAATTCTGAGACGTATGTGATATTTGGAGAGGCAAAGATAGAGGATTTGAGTTCTCAGTTGCAGACACAAGCTGCTCAGCAATTCAAGATGCCAGACATGGGGCATGTGATGGGAAAACCAGACATTTCTGGTACTGTTGAAGCCGGAGCATTGGGTGATGAGGAAGAGGAAGAAGAGATCGATGAATCTGGGGTGGAGGCTAGGGACATTGATTTGGTAATGACACAGGCTGGGGTCTCCAGGACCAAGGCCGTAAAAGCTCTCAAGACTCACGACGGGGATATTGTAAGTGCCATTATGGAGCTCACAACTTGA 942 45.12 MPPALVVESVESVEPEKESHQLSSAAELEKKLEWDDKPIVEDVDDDEDDDEDDEDDGKENGALGGSPLHISFSWSLTKIPSPPLSLFSATSNVFVLNPGFLAVQSFVISFHELAKMEMVFCKSMIFMLRYQFKLRQFCMRKESVLQFLLGRHSLRGSNESSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQTQAAQQFKMPDMGHVMGKPDISGTVEAGALGDEEEEEEIDESGVEARDIDLVMTQAGVSRTKAVKALKTHDGDIVSAIMELTT 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12480 14267 + ClCG01G000010.2 Cla01g00001 263590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00001 313 Pfam HYPK UBA domain 274 312 IPR044034 -
Cla01g00001 313 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 8 312 IPR016641 GO:0005854
Cla01g00001 313 MobiDBLite consensus disorder prediction 39 58 - -
Cla01g00001 313 PANTHER NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2 8 312 - -
Cla01g00001 313 MobiDBLite consensus disorder prediction 1 64 - -
Cla01g00001 313 Pfam NAC domain 167 222 IPR002715 -
Cla01g00001 313 Gene3D - 173 226 IPR038187 -
Cla01g00001 313 ProSiteProfiles NAC A/B domain profile. 164 229 IPR002715 -
Cla01g00001 313 MobiDBLite consensus disorder prediction 11 38 - -
Cla01g00001 313 SMART NAC_2 167 223 IPR002715 -
Cla01g00001 313 CDD UBA_NAC_euk 276 312 - -
Cla01g00001 313 Gene3D - 274 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00001 K03626 EGD2, NACA; nascent polypeptide-associated complex subunit alpha - sly:101252667 245.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00001 Cla-Chr1:12480 Cla04g00605 Cla-Chr4:20213703 6.83E-70 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g953 . . . . . . . . . . Cma02g01148 . Car02g00953 . . Cpe05g00575 . . . . . . . . Cla01g00001 . . . Clacu01g0001 Cmu01g0001 Cre09g2503 Cone1ag1027 Cone5ag0734 . . . . . . . . . Bda15g00799 . . . . . Cmo02g01184 . . . . . . . Bhi12g00740 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001063 2 3 1 2 2 2 3 2 2 2 3 3 5 2 2 5 3 6 3 2 1 2 3 2 2 2 3 5 2 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00001 Cla_Chr01 FPKM 0.326464 0.0 1.430586 1.074288 0.272796 0.457165 0.203876 0.962559 0.801898 1.44943