Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00008 ATGGGCGAGGCCGTGGTCGTCAGCTCTGAGGATGTGGATGTGGATGTGGATGTGGATGTTGATTATGTCAGGCTCCACCACAACGACGATATGGCGGACGCAGAGAGTATGGGCACTCACAGACCTAACAGAGATGCCAGTTCGACTGGGTTTGGGGTCGGGATTAAGTGGGAGCGCTTCTTGCCCAAGATGATGCTCAGGGTTTTGCTCGTCGAAGCCGACGATTCCACCAGACAGATTATCACTGCCCTTCTCCGCAAGTGCTGCTACCGAGTTGCTGCTGTTCCTGATGGCTTGAAAGCATGGGAGATTCTCAAAGAAAGGCCCCGTAATGTAGATCTTATATTGGCGGAAGTTGAATTGCCATCAATCTCTGGATTTGCTCTGCTAACTCTGATCATGGAGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCCTCCGAAGATTCTATCAGCACTGTTTATAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTCAAGCCCTTAAGGAGAAATGAGCTGAGAAATCTGTGGCAACATGTTTGGAGAAGACAAGCATCGTCCAATGTGAGAACTGACGTTCAAGAAAAGGTTGAAGTCACTTCTGAAAATGAGACTGCAAGCAATCACTCAACTGGTTGTGCTGCTGGAGTTCAGAGGAATAACAAAAACATTGAGAAAGGGAGTGATACTCAGAGCTCATGTACGAAGGTAGATTTTGAGGCTGGAAGTAAGATGCAGGAAAATTCACAGCGTAGGCAGGGAAAAGCCTCTCCCAACGACTTCAAGCTACAAAAAGATGAACATCACATCAATTTGAGTCAAAGATTGTTTATGCATGAAAACGAAACTGGAGGTAGCACTTATTTATTTATTCTGTTGCTGGTTGTTTCATGTGGTCGTTTCTTTTTCTTTTTGCAGAATCTAACTTCTATAAATTTTCACACTGTACTAGGATTGGCAATGAGTTGCTATCTCAATACTGATTTACCAATCACACTAAGCATGGGTCTTGAGCCGATCAATGATGGGAGAAATCCTAATATTGCTAGTGAAGTAGGTGATGATAAGGATTTGTTTGCCAACCCATCCAGAGGTGCAACTGCCTTGGATCATGCCTGTATCAAGTATCCCGATAACTACCAAAAAAGTTCTCCTTCCCACAATTTTGCTGCAAATAATTTCGGCTCTGCTCTTCATTTGGATCTTTCTCTGAGAAGATGTCAACCTAACGATTTTGAGGAACGTGCTACGGGACGGGCAACCCTCAAACATTCTAGTGCTTCAGCTTTTACAAGGTGTGATTTCTTTTTAGTTCTGATCCTTGGCCTTTCATTTGTGTGTGCGATTTTTAGTAGCAGACTAAGGCATCAATCTGAACTCTGGGCATTATCACTTGCAAATGAATGTTTTCTTAACTGCTTGCTAGAGAAATACAAAGCCTCGAAATTAGAAATGCATCCCTTCACTTCAAAACCTTCAATTGATGAAGTTCTTGCAACATCATACACTTTCAGGCCATTGCAATCACTTCAAGCAAAATCAACCAGTATCTGTGATGAGCAAAAAGAATTTGGAAGTAACCCCGAGCATATTGGAAGTATTGCTGCTACTTCTACCTCTGATGCCATTAATCCTACGCCAAATCTGCAAAAGAGTAATACTTCTATGCCTATGATCACGAGTCAATCCACTCATTCTGAAGTTGCTAAATCAAGTACTTCAGAGACGGTAATCCCTCTTCAAGTTTCAGTTAAAGATTTGATGTCTAATAATCAACGCTCGGGCTCAGGCTATAGCTCTTTACCTCCTCACAACTTCTGCACACAACGTGGTAGCCCATCGTCTCCATGCCAAACTTCAGCCACCCATCCAGAACTCATCTTTGGGAAACAGACGGTTTATCCCTCAAACTTTGAGAATCATAATTTGGAGCAATTTCTGAACCAGCATCACAACGTAAGCAGTCCAGCAAGCAGAAAGATAGAAAACTCGGGCCAGTCTGCAGAAAATCAAGGCCATATATCACCTACCACTGATCACAGTGCAAACAGTAATGTATGTTGTGGCAATACAACTCATGTTGGAAGTGTGGGATATCCTAGCACCTGCGGAAGCAACAGCAATTTAGATCGGACTGGGGTTGCAAGAGTTACAGCTGAGAGCAGAAATGAAGAAGCTTTGTTTTCTCAAGGAGGAGATTCTCACCGGTCCAGTCAAAGAGAAGCAGCTCTAACAAAGTTCCGACTGAAAAGAAAAGATAGATGTTATGAGAAAAAGGTCCGTTATGAGAGTAGAAAAAAGCTGGCAGAGCAGCGTCCTAGAGTGAAGGGACAGTTTGTCCGTAGAGTATGTACTGATCCATTGCCTGCAGAAACCAACGACAATACATCCAACAGTTAG 2412 43.08 MGEAVVVSSEDVDVDVDVDVDYVRLHHNDDMADAESMGTHRPNRDASSTGFGVGIKWERFLPKMMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNVDLILAEVELPSISGFALLTLIMEHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHVWRRQASSNVRTDVQEKVEVTSENETASNHSTGCAAGVQRNNKNIEKGSDTQSSCTKVDFEAGSKMQENSQRRQGKASPNDFKLQKDEHHINLSQRLFMHENETGGSTYLFILLLVVSCGRFFFFLQNLTSINFHTVLGLAMSCYLNTDLPITLSMGLEPINDGRNPNIASEVGDDKDLFANPSRGATALDHACIKYPDNYQKSSPSHNFAANNFGSALHLDLSLRRCQPNDFEERATGRATLKHSSASAFTRCDFFLVLILGLSFVCAIFSSRLRHQSELWALSLANECFLNCLLEKYKASKLEMHPFTSKPSIDEVLATSYTFRPLQSLQAKSTSICDEQKEFGSNPEHIGSIAATSTSDAINPTPNLQKSNTSMPMITSQSTHSEVAKSSTSETVIPLQVSVKDLMSNNQRSGSGYSSLPPHNFCTQRGSPSSPCQTSATHPELIFGKQTVYPSNFENHNLEQFLNQHHNVSSPASRKIENSGQSAENQGHISPTTDHSANSNVCCGNTTHVGSVGYPSTCGSNSNLDRTGVARVTAESRNEEALFSQGGDSHRSSQREAALTKFRLKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRRVCTDPLPAETNDNTSNS 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 70052 75313 - ClCG01G000080.2 Cla01g00008 263597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00008 803 Gene3D - 64 262 - -
Cla01g00008 803 SUPERFAMILY CheY-like 60 191 IPR011006 -
Cla01g00008 803 ProSiteProfiles Response regulatory domain profile. 67 185 IPR001789 GO:0000160
Cla01g00008 803 Pfam Response regulator receiver domain 68 179 IPR001789 GO:0000160
Cla01g00008 803 CDD psREC_PRR 68 171 - -
Cla01g00008 803 ProSiteProfiles CCT domain profile. 744 786 IPR010402 GO:0005515
Cla01g00008 803 MobiDBLite consensus disorder prediction 195 261 - -
Cla01g00008 803 PANTHER TWO-COMPONENT RESPONSE REGULATOR 40 436 IPR045279 GO:0009736
Cla01g00008 803 PANTHER TWO-COMPONENT RESPONSE REGULATOR 505 778 IPR045279 GO:0009736
Cla01g00008 803 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 505 778 - -
Cla01g00008 803 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 40 436 - -
Cla01g00008 803 MobiDBLite consensus disorder prediction 784 803 - -
Cla01g00008 803 MobiDBLite consensus disorder prediction 195 268 - -
Cla01g00008 803 MobiDBLite consensus disorder prediction 656 686 - -
Cla01g00008 803 MobiDBLite consensus disorder prediction 594 625 - -
Cla01g00008 803 Pfam CCT motif 744 786 IPR010402 GO:0005515
Cla01g00008 803 SMART REC_2 66 181 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00008 Cla-Chr1:70052 Cla04g00859 Cla-Chr4:23598226 2.85E-18 dispersed
Cla01g00008 Cla-Chr1:70052 Cla11g00324 Cla-Chr11:3670474 3.69E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60325 PF00072 Response_reg 8.70E-21 CL0304 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00008 K12130 - csv:101209788 1109.75