Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g00008 | ATGGGCGAGGCCGTGGTCGTCAGCTCTGAGGATGTGGATGTGGATGTGGATGTGGATGTTGATTATGTCAGGCTCCACCACAACGACGATATGGCGGACGCAGAGAGTATGGGCACTCACAGACCTAACAGAGATGCCAGTTCGACTGGGTTTGGGGTCGGGATTAAGTGGGAGCGCTTCTTGCCCAAGATGATGCTCAGGGTTTTGCTCGTCGAAGCCGACGATTCCACCAGACAGATTATCACTGCCCTTCTCCGCAAGTGCTGCTACCGAGTTGCTGCTGTTCCTGATGGCTTGAAAGCATGGGAGATTCTCAAAGAAAGGCCCCGTAATGTAGATCTTATATTGGCGGAAGTTGAATTGCCATCAATCTCTGGATTTGCTCTGCTAACTCTGATCATGGAGCACGAGACTTGCAAAAATATTCCTGTTATAATGATGTCCTCCGAAGATTCTATCAGCACTGTTTATAAATGCATGATGAAAGGTGCAGCAGACTATCTTGTCAAGCCCTTAAGGAGAAATGAGCTGAGAAATCTGTGGCAACATGTTTGGAGAAGACAAGCATCGTCCAATGTGAGAACTGACGTTCAAGAAAAGGTTGAAGTCACTTCTGAAAATGAGACTGCAAGCAATCACTCAACTGGTTGTGCTGCTGGAGTTCAGAGGAATAACAAAAACATTGAGAAAGGGAGTGATACTCAGAGCTCATGTACGAAGGTAGATTTTGAGGCTGGAAGTAAGATGCAGGAAAATTCACAGCGTAGGCAGGGAAAAGCCTCTCCCAACGACTTCAAGCTACAAAAAGATGAACATCACATCAATTTGAGTCAAAGATTGTTTATGCATGAAAACGAAACTGGAGGTAGCACTTATTTATTTATTCTGTTGCTGGTTGTTTCATGTGGTCGTTTCTTTTTCTTTTTGCAGAATCTAACTTCTATAAATTTTCACACTGTACTAGGATTGGCAATGAGTTGCTATCTCAATACTGATTTACCAATCACACTAAGCATGGGTCTTGAGCCGATCAATGATGGGAGAAATCCTAATATTGCTAGTGAAGTAGGTGATGATAAGGATTTGTTTGCCAACCCATCCAGAGGTGCAACTGCCTTGGATCATGCCTGTATCAAGTATCCCGATAACTACCAAAAAAGTTCTCCTTCCCACAATTTTGCTGCAAATAATTTCGGCTCTGCTCTTCATTTGGATCTTTCTCTGAGAAGATGTCAACCTAACGATTTTGAGGAACGTGCTACGGGACGGGCAACCCTCAAACATTCTAGTGCTTCAGCTTTTACAAGGTGTGATTTCTTTTTAGTTCTGATCCTTGGCCTTTCATTTGTGTGTGCGATTTTTAGTAGCAGACTAAGGCATCAATCTGAACTCTGGGCATTATCACTTGCAAATGAATGTTTTCTTAACTGCTTGCTAGAGAAATACAAAGCCTCGAAATTAGAAATGCATCCCTTCACTTCAAAACCTTCAATTGATGAAGTTCTTGCAACATCATACACTTTCAGGCCATTGCAATCACTTCAAGCAAAATCAACCAGTATCTGTGATGAGCAAAAAGAATTTGGAAGTAACCCCGAGCATATTGGAAGTATTGCTGCTACTTCTACCTCTGATGCCATTAATCCTACGCCAAATCTGCAAAAGAGTAATACTTCTATGCCTATGATCACGAGTCAATCCACTCATTCTGAAGTTGCTAAATCAAGTACTTCAGAGACGGTAATCCCTCTTCAAGTTTCAGTTAAAGATTTGATGTCTAATAATCAACGCTCGGGCTCAGGCTATAGCTCTTTACCTCCTCACAACTTCTGCACACAACGTGGTAGCCCATCGTCTCCATGCCAAACTTCAGCCACCCATCCAGAACTCATCTTTGGGAAACAGACGGTTTATCCCTCAAACTTTGAGAATCATAATTTGGAGCAATTTCTGAACCAGCATCACAACGTAAGCAGTCCAGCAAGCAGAAAGATAGAAAACTCGGGCCAGTCTGCAGAAAATCAAGGCCATATATCACCTACCACTGATCACAGTGCAAACAGTAATGTATGTTGTGGCAATACAACTCATGTTGGAAGTGTGGGATATCCTAGCACCTGCGGAAGCAACAGCAATTTAGATCGGACTGGGGTTGCAAGAGTTACAGCTGAGAGCAGAAATGAAGAAGCTTTGTTTTCTCAAGGAGGAGATTCTCACCGGTCCAGTCAAAGAGAAGCAGCTCTAACAAAGTTCCGACTGAAAAGAAAAGATAGATGTTATGAGAAAAAGGTCCGTTATGAGAGTAGAAAAAAGCTGGCAGAGCAGCGTCCTAGAGTGAAGGGACAGTTTGTCCGTAGAGTATGTACTGATCCATTGCCTGCAGAAACCAACGACAATACATCCAACAGTTAG | 2412 | 43.08 | MGEAVVVSSEDVDVDVDVDVDYVRLHHNDDMADAESMGTHRPNRDASSTGFGVGIKWERFLPKMMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRNVDLILAEVELPSISGFALLTLIMEHETCKNIPVIMMSSEDSISTVYKCMMKGAADYLVKPLRRNELRNLWQHVWRRQASSNVRTDVQEKVEVTSENETASNHSTGCAAGVQRNNKNIEKGSDTQSSCTKVDFEAGSKMQENSQRRQGKASPNDFKLQKDEHHINLSQRLFMHENETGGSTYLFILLLVVSCGRFFFFLQNLTSINFHTVLGLAMSCYLNTDLPITLSMGLEPINDGRNPNIASEVGDDKDLFANPSRGATALDHACIKYPDNYQKSSPSHNFAANNFGSALHLDLSLRRCQPNDFEERATGRATLKHSSASAFTRCDFFLVLILGLSFVCAIFSSRLRHQSELWALSLANECFLNCLLEKYKASKLEMHPFTSKPSIDEVLATSYTFRPLQSLQAKSTSICDEQKEFGSNPEHIGSIAATSTSDAINPTPNLQKSNTSMPMITSQSTHSEVAKSSTSETVIPLQVSVKDLMSNNQRSGSGYSSLPPHNFCTQRGSPSSPCQTSATHPELIFGKQTVYPSNFENHNLEQFLNQHHNVSSPASRKIENSGQSAENQGHISPTTDHSANSNVCCGNTTHVGSVGYPSTCGSNSNLDRTGVARVTAESRNEEALFSQGGDSHRSSQREAALTKFRLKRKDRCYEKKVRYESRKKLAEQRPRVKGQFVRRVCTDPLPAETNDNTSNS | 803 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 70052 | 75313 | - | ClCG01G000080.2 | Cla01g00008 | 263597 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g00008 | 803 | Gene3D | - | 64 | 262 | - | - | |
Cla01g00008 | 803 | SUPERFAMILY | CheY-like | 60 | 191 | IPR011006 | - | |
Cla01g00008 | 803 | ProSiteProfiles | Response regulatory domain profile. | 67 | 185 | IPR001789 | GO:0000160 | |
Cla01g00008 | 803 | Pfam | Response regulator receiver domain | 68 | 179 | IPR001789 | GO:0000160 | |
Cla01g00008 | 803 | CDD | psREC_PRR | 68 | 171 | - | - | |
Cla01g00008 | 803 | ProSiteProfiles | CCT domain profile. | 744 | 786 | IPR010402 | GO:0005515 | |
Cla01g00008 | 803 | MobiDBLite | consensus disorder prediction | 195 | 261 | - | - | |
Cla01g00008 | 803 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 40 | 436 | IPR045279 | GO:0009736 | |
Cla01g00008 | 803 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 505 | 778 | IPR045279 | GO:0009736 | |
Cla01g00008 | 803 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 | 505 | 778 | - | - | |
Cla01g00008 | 803 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 | 40 | 436 | - | - | |
Cla01g00008 | 803 | MobiDBLite | consensus disorder prediction | 784 | 803 | - | - | |
Cla01g00008 | 803 | MobiDBLite | consensus disorder prediction | 195 | 268 | - | - | |
Cla01g00008 | 803 | MobiDBLite | consensus disorder prediction | 656 | 686 | - | - | |
Cla01g00008 | 803 | MobiDBLite | consensus disorder prediction | 594 | 625 | - | - | |
Cla01g00008 | 803 | Pfam | CCT motif | 744 | 786 | IPR010402 | GO:0005515 | |
Cla01g00008 | 803 | SMART | REC_2 | 66 | 181 | IPR001789 | GO:0000160 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g00008 | Cla-Chr1:70052 | Cla04g00859 | Cla-Chr4:23598226 | 2.85E-18 | dispersed | |
Cla01g00008 | Cla-Chr1:70052 | Cla11g00324 | Cla-Chr11:3670474 | 3.69E-23 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60325 | PF00072 | Response_reg | 8.70E-21 | CL0304 | Cla | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g00008 | K12130 | - | csv:101209788 | 1109.75 |