Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00010 ATGGTTCATTTGACGAAGTTGATGGCAATAAGGTTTGTTGAATTAAATTGGGGGGACGTGATAATCGCATATTTGGAAAGAAAATTAGCTCCCTTAGTCCCGCCTCCCGCGCCTGTGGCTGTGGTATATTATCCTCTATTACGACCTAACCCTAAGCCCTTCGTCATCCCGTCCGGTCGCTGCGAAAGGAGGATCCCCGACACACCAGCTCTTCTTTCACCCCTTGCTGAGCCGCAGTACTGTCGCCATCGCTTTTCACTTTCTCGCTCCACTTTACTTCGTCGGTTTCTTAATCTTTGGTATGTTGCTCTCGTTACTCGTTACTTATATCTAATCACTGCGTGGATGTTGGCAATCTTGGATTTACATTTTGCTTACTCAGCTTCCTCCTTATTTGGACTAGGGATTGTTTTCTCAATGCTGTTAAGAGAGCTGAGTAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCGATCCGAGCTCGTGATGGATATAATTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCGTCTAGTGATCGTCGTAGTAGTTATGGTGGTAGTGGTGGTGGTGGTGGAGGGGGAGGGGGAGGGGGAGGAGGAGGAGGAGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTAAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGGACGTTTGGGATTGTTGATTATACTAACTATGATGACATGAAATATGCTATGCGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTGAAGAAGTACGACGGAAGTCCCACCAGGAGCAGGAGCAGAAGCCGTAGTAGAAGCCGGAGCCGGAGCCGAAGCCGTAGCCGTAGCCGGACTGCTAGACGAAATAGGAGCAAATCAGCCGAACGATCTGTTTCGAGATCAGTTTCAAGATCAAGATCTCCATCCCCTGTTAAATCTACAAGGCCACGGTCAAAATCAAGATCTGGGTCACCACGTCAGGCACGAGAAGGAAGTGAATGA 1185 47.34 MVHLTKLMAIRFVELNWGDVIIAYLERKLAPLVPPPAPVAVVYYPLLRPNPKPFVIPSGRCERRIPDTPALLSPLAEPQYCRHRFSLSRSTLLRRFLNLWYVALVTRYLYLITAWMLAILDLHFAYSASSLFGLGIVFSMLLRELSKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGSGGGGGGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERSVSRSVSRSRSPSPVKSTRPRSKSRSGSPRQAREGSE 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 82795 89757 - ClCG01G000100.2 Cla01g00010 263599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00010 394 SUPERFAMILY RNA-binding domain, RBD 140 313 IPR035979 GO:0003676
Cla01g00010 394 MobiDBLite consensus disorder prediction 328 348 - -
Cla01g00010 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 307 IPR000504 GO:0003723
Cla01g00010 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 194 IPR000504 GO:0003723
Cla01g00010 394 SMART rrm1_1 135 196 IPR000504 GO:0003723
Cla01g00010 394 SMART rrm1_1 244 313 IPR000504 GO:0003723
Cla01g00010 394 CDD RRM2_SF2_plant_like 243 318 - -
Cla01g00010 394 Gene3D - 137 239 IPR012677 -
Cla01g00010 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 200 IPR000504 GO:0003723
Cla01g00010 394 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 147 393 - -
Cla01g00010 394 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 147 393 - -
Cla01g00010 394 MobiDBLite consensus disorder prediction 361 383 - -
Cla01g00010 394 MobiDBLite consensus disorder prediction 319 394 - -
Cla01g00010 394 Gene3D - 242 320 IPR012677 -
Cla01g00010 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Cla01g00010 394 MobiDBLite consensus disorder prediction 199 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00010 K12890 SRSF1, SFRS1, ASF, SF2; serine/arginine-rich splicing factor 1 - csv:101210036 307.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00010 Cla-Chr1:82795 Cla03g01657 Cla-Chr3:32437273 6.13E-68 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g971 . . Bda05g00142 . . . Bma10g01319 . . . . . Car02g00950 . . Cpe05g00577 . . . . . . . . Cla01g00010 Cam01g0010 Cec01g0009 Cco01g0011 Clacu01g0011 Cmu01g0011 Cre09g2494 Cone1ag1018 . . . . Csa05g00007 Chy09g01474 . Blo07g00317 . . . . . . . . Cmo02g01181 Cmo15g01056 . . . . . Cpe13g00338 Bhi12g00700 . . . . . . . . . . . . . . . . Cme09g02022
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000386 3 9 3 2 2 3 5 3 3 3 2 3 3 3 4 5 3 7 5 3 3 3 4 3 3 2 3 22 7 3 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00010 Cla_Chr01 FPKM 4.376185 4.143178 2.147781 2.645113 0.96108 1.133353 0.876495 0.946518 0.908086 0.883081