Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00012 ATGGCTTCAACTCTTTCCTCTTCTCCTTCACCTTTGTTGTCCTTCAAACCCAGACCCCTCAAGAAAACCCCACCGGCACGAGTCACGGTCCTGCCTTTGAGGGTGAGAGCTGAGGCTGGAGCCGGTGGCGATCACAACAAAGATACATCTTTGGAGGTGCATGTCAATCCAAGCGCCCAGGGGACGTCCGTGGAGAGGCGGCCAGGGCCCAAGCGGCTGGCTCTAGACGTTTCACCTTATGGCGAAATGTTGGATGAAATGAGATTCAATTACCCTTTTGCAGGAATTTTAGACCCTTTATCTCCAATGAGGACGATGAGGCAAATGCTAGACACAGTTGACAGGTTGTTCGACGACGCAGTAATGATGAGGCCAGGATGGAGATGGAGCAGGGGTGAAGTCCGAGCTCCTTGGGACATCGAAGAGCACGAAAACGAAATCAGGATGCGTTTTGACATGCCTGGCCTCTCCAAGGAACATGTCAAGGTTTCTGTTGAAGACCATTTTTTGATTATTAAAGGCGGCCATGAAACTGAGACCACCAACACCAGCAGCAATGATGACGGCTGGTCCACAAGGAACGCCTCTGCCTACCACACCCGCCTCCAACTTCCTGAGGGCATTGACACAGATAACATCAAGGCCCAGCTTACCAATGGCGTTCTTTACATTACACTCCCCAAAATCAAAGTTCAACGCAAGGTCATGGATATAGAGATCCAGTAA 726 50.55 MASTLSSSPSPLLSFKPRPLKKTPPARVTVLPLRVRAEAGAGGDHNKDTSLEVHVNPSAQGTSVERRPGPKRLALDVSPYGEMLDEMRFNYPFAGILDPLSPMRTMRQMLDTVDRLFDDAVMMRPGWRWSRGEVRAPWDIEEHENEIRMRFDMPGLSKEHVKVSVEDHFLIIKGGHETETTNTSSNDDGWSTRNASAYHTRLQLPEGIDTDNIKAQLTNGVLYITLPKIKVQRKVMDIEIQ 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 94076 94855 - ClCG01G000120.1 Cla01g00012 263601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00012 241 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 7 241 IPR044587 GO:0009408
Cla01g00012 241 SUPERFAMILY HSP20-like chaperones 104 239 IPR008978 -
Cla01g00012 241 Gene3D - 94 241 IPR008978 -
Cla01g00012 241 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 129 241 IPR002068 -
Cla01g00012 241 MobiDBLite consensus disorder prediction 1 71 - -
Cla01g00012 241 PANTHER HEAT SHOCK PROTEIN 21, CHLOROPLASTIC 7 241 - -
Cla01g00012 241 Pfam Hsp20/alpha crystallin family 139 241 IPR002068 -
Cla01g00012 241 CDD ACD_sHsps-like 139 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00012 K13993 HSP20; HSP20 family protein - csv:101210285 388.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00012 Cla-Chr1:94076 Cla05g02629 Cla-Chr5:37478900 4.46E-28 dispersed
Cla01g00012 Cla-Chr1:94076 Cla07g01208 Cla-Chr7:29070377 4.25E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g976 . . . . . . . . . . . Cma15g00997 . Car15g00933 . . . . . . . . . . Cla01g00012 Cam01g0012 Cec01g0011 Cco01g0013 Clacu01g0013 Cmu01g0013 Cre09g2492 . . . . . Csa05g00004 Chy09g01476 . . . . . . . . . . . Cmo15g01062 . . . . . Cpe13g00336 Bhi12g00695 . . . Hepe06g0826 . . . . . . . . . . . . Cme09g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014143 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 0 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00012 Cla_Chr01 FPKM 4.694511 4.465969 8.686508 7.590809 32.949726 28.790829 32.095104 6.46975 6.508339 7.983994