Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00014 ATGCTCATTACGTGTTTTATTAGTTTTAAGGAAATAAACCTTAATCCAAATATTCGATTGAACATTGCTTTCATCTGTACCCCCCACCCCGAGCTTACTGAAGTTAGCTCATATCCTGCCCCAATTTCTAAACTTCCGTTCAATTTTATGGAGCATCACAACCTCATGAATCATTGTTGTGAAGATGATTTGCTCTATGTCAAGGTGCAGCAGGGAAGGGAACCCCTTGATGTTGACTTCTGTTCAATTTCAATAGATGGAAATCCAGATAATGATATTTTGCAGCGGCGGCTCAATGATGTTGCTAGACAAAGAGAGGATCTTCAACAGATGGAGATTGAACTTAGAGCACAAGTTATTGCAAGATCAGAAATATTGGAAATGCAAAAGAGTTTTGATGCTCAAATGAAAGAACACAATAATGCTGCCATCAAGATGCAGGAACAACTATGTGAAAGAGACCAGACTATTCATGAACTGGAAAGGAAAATAGAAGATAAAGATAGGGAATTGCAATCAATTAAATTAGACAATGAAGCGGCTTGGGCCAAGGATGATCTTCTGCGGGAACAAGATAAAGAAATAGCAACTTACAGGAGAGAACGTGATCATTCTGAAGCTGAAAGAGCTCAGCAAATAAAGCAAATGCACGAACTTCAAGAACACATCCATGAGAAAGAGCGGCAGCTTCTTGAGTTACAGGAGCAGCATAGGATTGCTCAAGAAACCATTTTGTACAAAGATGAACAATTGAGGGAAGCCCATGCTTGGATTGCTCGCGTCCAGGAAATGGACGCTTTGCAATCAACTACTAACCATTCGTTACAAGCTGAATTGCGTGAACGTACCGAGCAGTATAACCAGCTATGGCTTGGTTGCCAGCGCCAGTTTGCAGAGATGGAGAGGCTTCACGTGCATGCTATGCAACAACTCCAAATCGAGTTGGCTGATGCAAGGGAAAGAAGTGGGACTTACAATGATGAGTCAAATATATCTCAGACAAGTTCTAAAGATGTATCACAATATGGACAAACCAATGGTAACCAATTAGGTGGAGCAGCTTCAACTGGAAATAATGGGACACTGTCAAATGGAAATCCAGAAAATGCTCCATCTTTTAATTTGACTGGCAATTCATCTATCCAGGTGGGATTATGTGTCCTTCCCGTCCAACTATTGATCTTAAAAGTTATTACAACTGACCATGTATCCGGTGTTCCAATGGCTCCATCGTCTCTTCTCGGGATGCCACCCTACCTTCCACCTGGGCAGATGGCTGCTCTGCATCCTTTTTTGATGCATCAACCCGGGGTTCCTCATTCTGTACCTTCCCAAGTTCCTCAATCTCACATGGGGCATTTTTCATCATTACCAACTATATCATCCATCCAACCATGGCAGACTGAACAGGTACAGGGTTCCAACGTATCTGTTCAGAATGAACTTCAGTCATCTCAAAATGTCCCAAGCATGATGACATCAAATACCAACTACCCATACGAAATGGGCCAAATGGCTGATAATGGGCAAGCTCTTGAACCAGATTATCTGGATGTTCATTCCAGCAAGAGAAGAGAACCTGATTCAGGGCTTTCCTTATCTTCTGGAGAAACACAGCTTGAGTCGGTGGATAGAGGATACCAAGTTGCCCCTCAACCTGATACGAGCTTGCAACATGTTACCTCTCAATTTCATGATGCTCTAAGGATTGGTTCCACTTCTATTCAGCATAACAATGAAAAGGATCAAAATGATTTGGGTGCAGGTGATCAAGTCCTCGAGGAGCAAGGTTTAAGTGGGGGAAAATTAAGTCCTGCTGTCAGTACATTAACCTCTGATTCTTCCTCGGTTCACAATGTAAATGTCAGTGAAATGGTTATCAACAATGCTTCTGCATCTGGGGCGGTTGTACCTGAAGTTTTTGTTTCTTCTGGGCTGAAAATTCCAATGATGGTGGGGAAAACCTCAGAAACTCCACTTCTTGATGAAAGAGCATTATTGGCTTGCATTGTTCGCACTATTCCTGCTGGTGGTAGAATTCAAATAAGTTCAACACTGCCAAATAGGCTGTGCAAGATGCTTGCACCTTTACATTGGCGTGATTATGAGAAGAAGTATGGTAAGCTCGAAGACCTCGTAGCTGTTCATCCAGAATTATTTGTGATTGAGGGCGATTATATTCAGCTTCGCGAAGGAGCACAGAAGACAATAGCAGCTACTGCAGCTTTTGCAAAAGTTGCCGCAGCAGCTGCAGCTTCATCTCATTATTCATCACACTTGCCTTCAGTTGCTATGACCCCAATGGCTCATACTAATCGATCAAAGAGGATTCCATCTGCTGATTCAAAAAACATGAAAGCCGAGAAGACTTCTGTTTTTACTCCAAGTATGGCTAAGGATTCTCCGCAGGGCACACAAATGAAGAATCAACCTAAAAATGGTTTTCATTCGGCTGCTGGTGGAGGTCTATTGAACGTGAAACTTTTTACAAGATCAAAGGATAGTCGTGAATTGAATGTCTCAGAAGCCAAGCCTGGTGAATCATCTGTGTTTTTAGGGTTTGAAAATGGGTCTGTTCTTGATAGAACATCAAGTGGAAGCAGTCAAAGCTTACCTTCAACTGATGGAAGGTCTAGTGCCAATTTTTCTGGGAAACATCAGGGCAGGTATCATTCTAAACCATCTAGCTTGATGGCAGCTGCTTCATTGCCTTCAAGAAGATAA 2724 42.22 MLITCFISFKEINLNPNIRLNIAFICTPHPELTEVSSYPAPISKLPFNFMEHHNLMNHCCEDDLLYVKVQQGREPLDVDFCSISIDGNPDNDILQRRLNDVARQREDLQQMEIELRAQVIARSEILEMQKSFDAQMKEHNNAAIKMQEQLCERDQTIHELERKIEDKDRELQSIKLDNEAAWAKDDLLREQDKEIATYRRERDHSEAERAQQIKQMHELQEHIHEKERQLLELQEQHRIAQETILYKDEQLREAHAWIARVQEMDALQSTTNHSLQAELRERTEQYNQLWLGCQRQFAEMERLHVHAMQQLQIELADARERSGTYNDESNISQTSSKDVSQYGQTNGNQLGGAASTGNNGTLSNGNPENAPSFNLTGNSSIQVGLCVLPVQLLILKVITTDHVSGVPMAPSSLLGMPPYLPPGQMAALHPFLMHQPGVPHSVPSQVPQSHMGHFSSLPTISSIQPWQTEQVQGSNVSVQNELQSSQNVPSMMTSNTNYPYEMGQMADNGQALEPDYLDVHSSKRREPDSGLSLSSGETQLESVDRGYQVAPQPDTSLQHVTSQFHDALRIGSTSIQHNNEKDQNDLGAGDQVLEEQGLSGGKLSPAVSTLTSDSSSVHNVNVSEMVINNASASGAVVPEVFVSSGLKIPMMVGKTSETPLLDERALLACIVRTIPAGGRIQISSTLPNRLCKMLAPLHWRDYEKKYGKLEDLVAVHPELFVIEGDYIQLREGAQKTIAATAAFAKVAAAAAASSHYSSHLPSVAMTPMAHTNRSKRIPSADSKNMKAEKTSVFTPSMAKDSPQGTQMKNQPKNGFHSAAGGGLLNVKLFTRSKDSRELNVSEAKPGESSVFLGFENGSVLDRTSSGSSQSLPSTDGRSSANFSGKHQGRYHSKPSSLMAAASLPSRR 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 110232 120555 - ClCG01G000140.2 Cla01g00014 263603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00014 907 MobiDBLite consensus disorder prediction 858 907 - -
Cla01g00014 907 MobiDBLite consensus disorder prediction 858 890 - -
Cla01g00014 907 MobiDBLite consensus disorder prediction 767 819 - -
Cla01g00014 907 MobiDBLite consensus disorder prediction 784 813 - -
Cla01g00014 907 PANTHER OS08G0543600 PROTEIN 62 893 - -
Cla01g00014 907 Coils Coil 188 243 - -
Cla01g00014 907 Coils Coil 91 118 - -
Cla01g00014 907 PANTHER OS08G0543600 PROTEIN 62 893 - -
Cla01g00014 907 MobiDBLite consensus disorder prediction 321 371 - -
Cla01g00014 907 MobiDBLite consensus disorder prediction 520 541 - -
Cla01g00014 907 MobiDBLite consensus disorder prediction 481 503 - -
Cla01g00014 907 MobiDBLite consensus disorder prediction 325 371 - -
Cla01g00014 907 Coils Coil 157 177 - -
Cla01g00014 907 Coils Coil 308 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00014 - - - csv:101218478 1415.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g982 Blo06g01050 Blo15g00076 . . . Bpe07g01028 . . . . Cma02g01147 Cma15g01000 Car02g00948 Car15g00935 . Cpe05g00579 . . . . . . . . Cla01g00014 . . Cco01g0015 Clacu01g0015 Cmu01g0015 . Cone1ag1013 Cone5ag0720 . . . Csa05g00002 Chy09g01478 . . . Bda06g00796 Bda15g00797 . . Bma08g00399 Bma12g01223 . Cmo02g01178 Cmo15g01064 . . . . . Cpe13g00335 Bhi12g00691 . . . Hepe06g0825 . . . . . . . . . . . . Cme09g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004264 2 4 2 2 2 0 2 1 0 1 1 1 1 1 1 2 1 2 2 0 1 1 1 1 1 0 1 5 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00014 Cla_Chr01 FPKM 47.222992 49.924477 35.100853 36.701935 59.639214 66.492073 61.023804 39.795437 41.69875 38.440926