Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00017 ATGGGGTTCGGCGGCGGCGGCGATAAGCATCATCACCACCTCATGCATCTGAATTTCCATTTCCACATTCATTTCCCTCATTTTCACCACCATCGGAATAGGTTAGAGACTCCCAAAGGGTGTTTAGCCATTCTTGTTGGCCAAGAGCAACAGCGGTTCGTGATTCCTGTCATTTATGTCAACCATCCTCTCTTCGTCCAGCTCTTGAAGGAGGCCGAGGACGAGTATGGCTTCGATCAGAAAGGACCCATCTCCATCCCCTGCCCTGTCGACGACTTTCGCACTCTTCAAGGCATTATTCACCATGACCACCACAACCACCACCACCTTCCCGTCTCCTGTTTTAGGGATTCTTCTCATCCCCATTGCTGA 372 50.81 MGFGGGGDKHHHHLMHLNFHFHIHFPHFHHHRNRLETPKGCLAILVGQEQQRFVIPVIYVNHPLFVQLLKEAEDEYGFDQKGPISIPCPVDDFRTLQGIIHHDHHNHHHLPVSCFRDSSHPHC 123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 130052 130423 - ClCG01G000155.1 Cla01g00017 263606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00017 123 Pfam Auxin responsive protein 35 96 IPR003676 GO:0009733
Cla01g00017 123 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 16 109 IPR003676 GO:0009733
Cla01g00017 123 PANTHER SAUR-LIKE AUXIN-RESPONSIVE FAMILY PROTEIN 16 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00017 K14488 SAUR; SAUR family protein - pop:7486796 131.339
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00017 Cla-Chr1:130052 Cla06g00247 Cla-Chr6:3070501 1.16E-30 dispersed
Cla04g00122 Cla-Chr4:3523119 Cla01g00017 Cla-Chr1:130052 4.71E-15 transposed
Cla01g00017 Cla-Chr1:130052 Cla05g00058 Cla-Chr5:643115 5.05E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g984 Blo06g01052 . . . . . . . . . Cma02g01144 Cma15g01004 . Car15g00938 . Cpe05g00581 . . . . . . . . Cla01g00017 . . . . . . Cone14ag0451 Cone15ag0481 . Cone18ag0993 . Csa05g00018 Chy09g01463 . . . . Bda15g00796 . Bpe12g00336 Bma08g00398 . . Cmo02g01175 . . . . . . Cpe13g00332 . . . . . . . . . . . . . . . . . Cme09g02014
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014861 0 0 0 0 0 0 1 0 0 0 1 0 2 1 1 1 0 0 2 0 1 2 1 0 0 0 1 2 1 0 17
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00017 Cla_Chr01 FPKM 8.954576 10.418907 9.263971 9.989549 9.794428 9.734486 10.509236 15.688528 14.554062 16.728416