Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00023 ATGGCTTCGGATCCGAAGGTTCATCTATTTGAAGAAGTGGCAAAGCACAACAAAACCAAAGATTGCTGGCTTGTAATCTCTGGGAAGGTTTATGATGTAACTCCTTTCATGGAGGATCACCCCGGAGGTGATGAAGTATTATTGTCAGCAACTGGAAAAGATGCTACGAACGATTTCGAAGATGTTGGGCACAGCGATTCAGCAAGAGAAATGATGGACAAATATTACATTGGAGAAATTGATCCTTCAACAGTTCCTTTGAAGAAGATTTACATTCCATCACAACAAACGCAGTATAACCCAGATAAGACACCCGAGTTTGTGATTAAGATCTTGCAGTTTTTGGTTCCCATATTGATTTTGGGTTTGGCGTTTGCTGTTCGACACTACACCAAGAATGAATAA 405 40.49 MASDPKVHLFEEVAKHNKTKDCWLVISGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSAREMMDKYYIGEIDPSTVPLKKIYIPSQQTQYNPDKTPEFVIKILQFLVPILILGLAFAVRHYTKNE 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 156146 158349 - ClCG01G000210.1 Cla01g00023 263612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00023 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Cla01g00023 134 PANTHER CYTOCHROME B5 1 132 - -
Cla01g00023 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 87 IPR036400 -
Cla01g00023 134 SMART Cyt_b5_2 8 81 IPR001199 -
Cla01g00023 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 80 IPR001199 -
Cla01g00023 134 Gene3D - 1 86 IPR036400 -
Cla01g00023 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cla01g00023 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cla01g00023 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cla01g00023 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cla01g00023 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cla01g00023 134 PANTHER CYTOCHROME B5-LIKE 1 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00023 Cla-Chr1:156146 Cla05g00353 Cla-Chr5:3195017 1.78E-67 dispersed
Cla06g00312 Cla-Chr6:4015887 Cla01g00023 Cla-Chr1:156146 2.53E-11 transposed
Cla01g00023 Cla-Chr1:156146 Cla05g00061 Cla-Chr5:677537 9.40E-48 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00023 K23490 - csv:101207109 273.092