Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00023 ATGGCTTCGGATCCGAAGGTTCATCTATTTGAAGAAGTGGCAAAGCACAACAAAACCAAAGATTGCTGGCTTGTAATCTCTGGGAAGGTTTATGATGTAACTCCTTTCATGGAGGATCACCCCGGAGGTGATGAAGTATTATTGTCAGCAACTGGAAAAGATGCTACGAACGATTTCGAAGATGTTGGGCACAGCGATTCAGCAAGAGAAATGATGGACAAATATTACATTGGAGAAATTGATCCTTCAACAGTTCCTTTGAAGAAGATTTACATTCCATCACAACAAACGCAGTATAACCCAGATAAGACACCCGAGTTTGTGATTAAGATCTTGCAGTTTTTGGTTCCCATATTGATTTTGGGTTTGGCGTTTGCTGTTCGACACTACACCAAGAATGAATAA 405 40.49 MASDPKVHLFEEVAKHNKTKDCWLVISGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSAREMMDKYYIGEIDPSTVPLKKIYIPSQQTQYNPDKTPEFVIKILQFLVPILILGLAFAVRHYTKNE 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 156146 158349 - ClCG01G000210.1 Cla01g00023 263612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00023 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Cla01g00023 134 PANTHER CYTOCHROME B5 1 132 - -
Cla01g00023 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 87 IPR036400 -
Cla01g00023 134 SMART Cyt_b5_2 8 81 IPR001199 -
Cla01g00023 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 80 IPR001199 -
Cla01g00023 134 Gene3D - 1 86 IPR036400 -
Cla01g00023 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cla01g00023 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cla01g00023 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cla01g00023 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cla01g00023 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cla01g00023 134 PANTHER CYTOCHROME B5-LIKE 1 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00023 K23490 CYB5; cytochrome b5 - csv:101207109 273.092
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00023 Cla-Chr1:156146 Cla05g00353 Cla-Chr5:3195017 1.78E-67 dispersed
Cla06g00312 Cla-Chr6:4015887 Cla01g00023 Cla-Chr1:156146 2.53E-11 transposed
Cla01g00023 Cla-Chr1:156146 Cla05g00061 Cla-Chr5:677537 9.40E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g991 . . . Bda07g01952 . . . Bma14g02023 . . Cma02g01139 Cma15g01010 Car02g00943 Car15g00942 . Cpe05g00584 . . . . . . . . Cla01g00023 Cam01g0022 Cec01g0020 Cco01g0024 Clacu01g0023 Cmu01g0022 Cre09g2485 Cone1ag1008 Cone5ag0716 . . . Csa05g00025 Chy09g01458 . . Blo09g00007 . . . . . . . Cmo02g01170 Cmo15g01073 . . . . . Cpe13g00327 Bhi12g00682 . . . Hepe06g0817 . . . . . . . . . Lsi09g00003 . . Cme09g02007
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla01g00023 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.4e-59 224.6
Cla05g00353 . 106 238 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Cla06g00745 . 31 134 NADPH P450 reductases AT5G53560 67.3 4.8e-37 151.0
Cla05g00353 . 106 237 NADPH P450 reductases AT5G48810 64.9 8.2e-48 186.8
Cla01g00023 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.5e-45 177.2
Cla05g00353 . 127 238 NADPH P450 reductases AT2G32720 84.8 7.6e-51 196.8
Cla06g00745 . 3 134 NADPH P450 reductases AT2G32720 69.2 4.3e-46 181.0
Cla01g00023 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.1e-40 162.2
Cla10g01589 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.9e-127 450.3
Cla02g02350 . 55 327 NADPH P450 reductases AT5G17770 73.3 3.7e-116 414.8
Cla04g00515 . 2 372 NADPH P450 reductases AT5G17770 59.6 8.8e-110 393.7
Cla01g00023 . 1 134 NADPH P450 reductases AT5G53560 79.1 3.4e-59 224.6
Cla05g00353 . 106 238 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Cla06g00745 . 31 134 NADPH P450 reductases AT5G53560 67.3 4.8e-37 151.0
Cla05g00353 . 106 237 NADPH P450 reductases AT5G48810 64.9 8.2e-48 186.8
Cla01g00023 . 1 134 NADPH P450 reductases AT5G48810 59.6 6.5e-45 177.2
Cla05g00353 . 127 238 NADPH P450 reductases AT2G32720 84.8 7.6e-51 196.8
Cla06g00745 . 3 134 NADPH P450 reductases AT2G32720 69.2 4.3e-46 181.0
Cla01g00023 . 22 133 NADPH P450 reductases AT2G32720 67.0 2.1e-40 162.2
Cla10g01589 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.9e-127 450.3
Cla02g02350 . 55 327 NADPH P450 reductases AT5G17770 73.3 3.7e-116 414.8
Cla04g00515 . 2 372 NADPH P450 reductases AT5G17770 59.6 8.8e-110 393.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00023 Cla_Chr01 FPKM 44.516045 51.821751 35.350304 39.35268 20.124151 20.32935 19.114208 44.02293 47.336582 41.914585