Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00031 ATGGGTAGCGTTAGCGGAGATGAAGAATCCCCATTTTTTGATGCCCAAGAGATCAATGCTCCCTCGATATCTGAACCCAATTGCGATTGTATGGAGGCGGCTTTTGATTCTCATCCCAGATTCAACAATTGGGTCGATGGGAGTTTGGTTTATGATGTTTGGAATCGAAGCCCCATGAGTGTTCACGAACGTCGGAGGAAGTTTTTGAAATGGATGGGGATGGGATTAGATCGTACTCCTCCATATCATACCAATTCTCTGTCTCTCTGCAGTGATTGGAGAGAAGGGGATGGAGGAAGATTAATGGACAATTCTGGGGTTGAATCCTCTGATTTTGAAGATGTGTTTGTCTCGGGGAGATCTTCCATCTCATGTTGGTCTACTGATGATATTGAACTTTCAGAGATGGCTTCATCCAGTACCCTTCTGTACAGGGATGATGGGATTAAGGGAGAATGTGGCAGGAAAAATGGGGATCTAAAACCCTCTGTTCGGTTTGCAATGCCTGAACAGCTTGAGGGGACTTCTAGTTCCTCACCATCTTTCCAACAAATGATGGAGTTGGAGGCTGACAGAGCAAACATCCCATTGCGTTCAGCCCGAAGAGTCAACAAACGTTGGCTTAAGAAATTGCGTTCGGCAGCCTGCATTTTCGAGAAACATGGTAAGTCAACAAGATTGGTAGTTGATGATGATTCGGCTGCAGAGTCGAGAGTTCGGAGGGTGAAAGTTCGCCATTGCAAGAAGCATTTGAAGGAACTATCAGCCCTGTATATGGGACAAGATATTAAGGCACATGAAGGTGCTATATTGACAATGAAGTTTAGTCCTAATGGACAGTATCTTGCTACTGGTGGTGATGATGGGATTGTTAAATTGTGGCAAGTGATTGAAGATGAGAGATCTAATGAATCTGACATCCCCGAAATTGATCCATCCTGCATATATTTCACAGTGAATCGACTCTCCGAGTTGAAACCCCTGCTTGTGGAGAAAGAGAAGATGGCTAACTCAATGACCTTGAGGAAAACATCGGAATCAGCTTGTATAATTTTTCCACCTAAAATCTTCAGGATATTGGACAGACCATTGCACGAGTTTCATGGACATTCTGGTGATATTTTGGATCTCTCTTGGTCAAAAAACAATTATCTTCTGTCATCATCAATTGATAAAACTGTCCGACTTTGGCGATTGGGATCTGATGATTGTCTCAGAGTTTTTTCACATAGTAATTATGTTACTTGTGTTCATTTTAATCCCATGGATGAAAATTACTTTATCAGTGGTTCAATAGATGGAAAGATTCGCATTTGGGGAATTCCTTCTTGTCAAGTTGTTGACTGGATTGACATTAGGGAAATTGTCACTGCAGTGTCTTATCATCCTGATGGACAGGGAGGAATTGTTGGCTCCATAAATGGTACTTGCCGCTTCTTTAAAGTAATAGGTGATAATAACCTGGAATTAGATGGCGAAATATGTTTGTCCAGTAAGAAGAAGTCACCCAGTAAAAAGATAACGGGGTTTCAGTATTCTGCAGAAGATTCAAGCAGAATAATGGTGAGCTCTGCTGATTCTCGAATCCGGATTATTCAAGGGCTTAATGTGATTCAGAAGTACAAGGTCAGCTTGATTGGTTATTTCGATTATGAAGATTTTGCTTTTAACCAAATGGTGTCGTTCGTCGTATCTTGTCTTCCATGTGCACTCATAAGCAAGTTTCGTCTTTTCTGTTCAGGGCCTTGTAATACGGGAAACCAGATGTCTGCATCGTTTACCTCAGATGGGAAACATATTATCTCGGCTAGTGGGGATTCTAATGTATATGTATGGAACTGCAGTTATCAGAACGAGGCTGTTCTTTCCCCAGTGAAAAAGATTAAGTCGTATGAATATTTCTCCCCCAATGCTTCCATTGCGGTACCATGGTGTGGTTTGAGATGTAACACAGAGGTTGATAGAAGACATTTTCCTGGCATGCAAAGGAATTCGCCTGAAACTTTCCCGCTTCCATCACCTGCGTTTTTCTCTTTGAGCCAAGAGTTATTAGAATCCTTCCCCAAGGGATCTGCAACTTGGCCCGAGGAGAAGCTCCCAACTTTGAGCCTACTAACGAAACCATCTATGATGCATAAATCTCGGTATAAGTTTCTGAAGTTGTCTTGCCAAAATACATCAAGTTCTCATGCTTGGGGTCTGGTCATCGTGACTGCAGGATGGGATGGACGAATCAGGTCGTTTCACAATTACGGGTTGCCTGTACATGGTCAGTTTATGGAAATGACAATTGATGGAAGAAGCTTCTCTGTAGAGGAAACGACTTCGAATCAGCTAATGGCCAAGGTTACTGCAGGGATTGGAGGACCTCTTACCTCTTGCCTTTTCTGCTCTAACATGGTCAAGGAAATCAACATTGGTGGTCTGAATTCAGTGAAGGAGAATTGGTATAAATGCCATTATATCATGTGGGCCATTTTTGATTGA 2487 42.3 MGSVSGDEESPFFDAQEINAPSISEPNCDCMEAAFDSHPRFNNWVDGSLVYDVWNRSPMSVHERRRKFLKWMGMGLDRTPPYHTNSLSLCSDWREGDGGRLMDNSGVESSDFEDVFVSGRSSISCWSTDDIELSEMASSSTLLYRDDGIKGECGRKNGDLKPSVRFAMPEQLEGTSSSSPSFQQMMELEADRANIPLRSARRVNKRWLKKLRSAACIFEKHGKSTRLVVDDDSAAESRVRRVKVRHCKKHLKELSALYMGQDIKAHEGAILTMKFSPNGQYLATGGDDGIVKLWQVIEDERSNESDIPEIDPSCIYFTVNRLSELKPLLVEKEKMANSMTLRKTSESACIIFPPKIFRILDRPLHEFHGHSGDILDLSWSKNNYLLSSSIDKTVRLWRLGSDDCLRVFSHSNYVTCVHFNPMDENYFISGSIDGKIRIWGIPSCQVVDWIDIREIVTAVSYHPDGQGGIVGSINGTCRFFKVIGDNNLELDGEICLSSKKKSPSKKITGFQYSAEDSSRIMVSSADSRIRIIQGLNVIQKYKVSLIGYFDYEDFAFNQMVSFVVSCLPCALISKFRLFCSGPCNTGNQMSASFTSDGKHIISASGDSNVYVWNCSYQNEAVLSPVKKIKSYEYFSPNASIAVPWCGLRCNTEVDRRHFPGMQRNSPETFPLPSPAFFSLSQELLESFPKGSATWPEEKLPTLSLLTKPSMMHKSRYKFLKLSCQNTSSSHAWGLVIVTAGWDGRIRSFHNYGLPVHGQFMEMTIDGRSFSVEETTSNQLMAKVTAGIGGPLTSCLFCSNMVKEINIGGLNSVKENWYKCHYIMWAIFD 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 231120 236420 + ClCG01G000290.1 Cla01g00031 263620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00031 828 SUPERFAMILY WD40 repeat-like 262 747 IPR036322 GO:0005515
Cla01g00031 828 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 367 399 - -
Cla01g00031 828 PANTHER WD REPEAT DOMAIN 44 579 756 IPR040324 -
Cla01g00031 828 PANTHER WD REPEAT DOMAIN 44 7 543 IPR040324 -
Cla01g00031 828 PRINTS G protein beta WD-40 repeat signature 427 441 IPR020472 -
Cla01g00031 828 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Cla01g00031 828 PRINTS G protein beta WD-40 repeat signature 385 399 IPR020472 -
Cla01g00031 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 407 439 IPR001680 GO:0005515
Cla01g00031 828 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 579 756 - -
Cla01g00031 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 367 407 IPR001680 GO:0005515
Cla01g00031 828 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 296 - -
Cla01g00031 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Cla01g00031 828 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 407 439 - -
Cla01g00031 828 Gene3D - 249 620 IPR015943 GO:0005515
Cla01g00031 828 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 543 - -
Cla01g00031 828 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 613 IPR001680 GO:0005515
Cla01g00031 828 Pfam WD domain, G-beta repeat 263 294 IPR001680 GO:0005515
Cla01g00031 828 Pfam WD domain, G-beta repeat 362 397 IPR001680 GO:0005515
Cla01g00031 828 Pfam WD domain, G-beta repeat 403 439 IPR001680 GO:0005515
Cla01g00031 828 SMART WD40_4 574 613 IPR001680 GO:0005515
Cla01g00031 828 SMART WD40_4 401 440 IPR001680 GO:0005515
Cla01g00031 828 SMART WD40_4 256 295 IPR001680 GO:0005515
Cla01g00031 828 SMART WD40_4 493 533 IPR001680 GO:0005515
Cla01g00031 828 SMART WD40_4 443 481 IPR001680 GO:0005515
Cla01g00031 828 SMART WD40_4 360 398 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00031 - - - csv:101206156 1414.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00031 Cla-Chr1:231120 Cla11g01778 Cla-Chr11:31362953 1.77E-105 dispersed
Cla01g01526 Cla-Chr1:29773160 Cla01g00031 Cla-Chr1:231120 2.79E-122 transposed
Cla01g00031 Cla-Chr1:231120 Cla01g00160 Cla-Chr1:1644424 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00031 Cla_Chr01 FPKM 26.57902 30.342075 48.237881 44.960701 45.493958 51.385349 54.065445 47.491413 46.677753 46.292347