Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00037 ATGGTCTATTGTTCACCACGAGCTCTGTTTTTTCGGCTGCTCAACTCTCTAGTCTCTGCAATGTCGACTTTCCTTCTTCTATCTTCTCAATCTTCCACCTCGCACAGGGTGAGCGAAATCTGTCTTTGCCTGCAGTCATTGCAGTTGCAAAAGGGCATCACATGCCCTTCAGTTTGCCTTCAGAAACAGAAATATAATATCAAGCTTTATGCTGTACCTGTTGGAGCCTTTTCTTGTCGCTTTGCACCAACACCTTCTGCTTCTAATAGAGCTGATTTGGGGGGTCAGAGGAAACATCTTTCTTCTGCCTTCACTGCTCCAAATGGATATCAGAGTAGGCCTGAGCTCATGCACAACCGTACTGATGGGAACAGCATGATTGAGTTTGAAGTTCAGTTGGAAGAATTATTCAATGAGGTCAAAATGATGGCTATGAGCGGGAGGAAGAATGATGCTGTCGAGCTACTTCAAGCTAATTATGAAGCTGTAAAAGAACAGATGGAATCAGGTGCTATTGGCATCGAACAAGCCGCTGTTCTTGACATCGTGGCTTTGGGGTATATAACTGTTGGAGACTTGAAGTTTGTTGCTTCTGTATTGGATATATTGAACAAGGTTGTTGACAGTCTGGAGGACAGTGAACCCTTTCTGGATTCAGTGCTTCTGCATATGGGGAGCATGTACTCAACTTTAAAAAAGTTTGAGAAATCAATGTCTGCATACAAGAGGGCTATTGATATCATAGAGAAGAAAAGTGGTAAGGGAGCTTTTGGGGACATACCTTCTTACAATGAATCCTTTGCAGGAGAGGACAGTACCTTTCTTATCACTCCAATTTTAGGGATGGCTAAAGTTCTTGGTATCATTGGAAGAACTGCAAAGGCTGTAGAGTTTTACCATCGTGCAATTTCACTTCTGGAATCAACCAGAGGCTTTGAGAACGAGGATTTGGTTATACCTTTATTTGGTCTGGGCAATCTAATGCTCAAAGAAGGAAAAGGCAAGGATGCAGAAACTTGTTTTGCTAGGATTGTGGACATATATAAAAAGTTATATGGAGAAAAGGATGGAAAAGTTGGAATGGCTATGTATTCTCTGGCTAATGCAAAGTGTGCAAGAGGTAGCTTCGGTCACTTGTCATCTTTCATACACCAGCTAAAATTTTCATTTGCAAAATATTCTTCCATTGGGGAAGCAGACGAAGCTGTTACCCTATATAGAAGAGCTTTGCACATTATCAAGGATTCAAATGATATGGCTTTAGACGACAGCGTGATGGAGAAGATGAGGATTGAGTTGGCAGAACTATTGCATGTTGTTGGAAGGGGGAGTGAAGGCAGAGAAATTCTAGAAGAGTGTTTGTTGATCAATGAAAGATCGAAAGGAAAAGAGCATCCCAGCTCAGTGAAGCACCTTGTAAACCTTGCAGCTTCTTATTCAAGGTCAAAGAATTATGCTGAGGCTGAGCGTCTGTTGCGAATTGGATTGGACATTATGATAAAGGCAGTGGGACCTGATGATCAATCAATTACAGTCCCCATGTTGAATCTTGCTGTCACTCTTTACAATCTAAAACAAGACGACAATGCTGAGCAACTTGCACTGGAAGTTTTGCGAATACGGGAAAGTGCTTTTGGAAAAGATTCTCTTCCTGTTGGTGAGGCTCTAGATTGTCTGGTTTCCATTCAAAGCAGGCTAGGGAAGGATGAAAACGAGCTACTGAAGCTGCTTAAGAGAATTCTTAGAATCCAGGAGAGAGAGTTCGGGCATGATGGAAAAGAGGTCATTGATACCCTCAAGAAAATAGTGTTCTACATGGAAAAACTAGGAATGAAAGATGAGAAGTTTCTACTTCAAAAACGACTGTCCATGCTGCGGATGAAATTCAAGAACCAGATGCAATACTAA 1908 41.72 MVYCSPRALFFRLLNSLVSAMSTFLLLSSQSSTSHRVSEICLCLQSLQLQKGITCPSVCLQKQKYNIKLYAVPVGAFSCRFAPTPSASNRADLGGQRKHLSSAFTAPNGYQSRPELMHNRTDGNSMIEFEVQLEELFNEVKMMAMSGRKNDAVELLQANYEAVKEQMESGAIGIEQAAVLDIVALGYITVGDLKFVASVLDILNKVVDSLEDSEPFLDSVLLHMGSMYSTLKKFEKSMSAYKRAIDIIEKKSGKGAFGDIPSYNESFAGEDSTFLITPILGMAKVLGIIGRTAKAVEFYHRAISLLESTRGFENEDLVIPLFGLGNLMLKEGKGKDAETCFARIVDIYKKLYGEKDGKVGMAMYSLANAKCARGSFGHLSSFIHQLKFSFAKYSSIGEADEAVTLYRRALHIIKDSNDMALDDSVMEKMRIELAELLHVVGRGSEGREILEECLLINERSKGKEHPSSVKHLVNLAASYSRSKNYAEAERLLRIGLDIMIKAVGPDDQSITVPMLNLAVTLYNLKQDDNAEQLALEVLRIRESAFGKDSLPVGEALDCLVSIQSRLGKDENELLKLLKRILRIQEREFGHDGKEVIDTLKKIVFYMEKLGMKDEKFLLQKRLSMLRMKFKNQMQY 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 286932 293711 + ClCG01G000360.2 Cla01g00037 263626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00037 635 SUPERFAMILY TPR-like 220 498 IPR011990 GO:0005515
Cla01g00037 635 SMART tpr_5 511 544 IPR019734 GO:0005515
Cla01g00037 635 SMART tpr_5 318 351 IPR019734 GO:0005515
Cla01g00037 635 SMART tpr_5 276 309 IPR019734 GO:0005515
Cla01g00037 635 SMART tpr_5 218 251 IPR019734 GO:0005515
Cla01g00037 635 SMART tpr_5 469 502 IPR019734 GO:0005515
Cla01g00037 635 Pfam Tetratricopeptide repeat 514 549 - -
Cla01g00037 635 Pfam Tetratricopeptide repeat 429 498 - -
Cla01g00037 635 Coils Coil 231 251 - -
Cla01g00037 635 ProSiteProfiles TPR repeat profile. 218 251 IPR019734 GO:0005515
Cla01g00037 635 Gene3D Tetratricopeptide repeat domain 383 628 IPR011990 GO:0005515
Cla01g00037 635 Gene3D Tetratricopeptide repeat domain 262 382 IPR011990 GO:0005515
Cla01g00037 635 Pfam Tetratricopeptide repeat 220 249 IPR019734 GO:0005515
Cla01g00037 635 Gene3D Tetratricopeptide repeat domain 43 258 IPR011990 GO:0005515
Cla01g00037 635 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 133 624 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00037 - - - cmax:111491290 899.812
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1027 . . . . . . . . . . Cma02g01123 . . . . Cpe05g00595 . . . . . . . . Cla01g00037 Cam01g0035 Cec01g0034 Cco01g0036 Clacu01g0038 Cmu01g0035 Cre09g2471 . . Cone14ag0004 . . Csa05g00043 Chy09g01443 . . . Bda06g00789 . . . . . . Cmo02g01152 . . . . . . . Bhi12g00649 . . Lac11g0164 Hepe06g0796 . Lcy12g0140 . . . . . . . Lsi09g00017 . . Cme09g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009135 1 6 0 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00037 Cla_Chr01 FPKM 1.763494 1.146507 25.847294 25.334652 8.763138 11.584871 10.619715 19.624142 19.754313 17.974178