Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00042 ATGAGGCTGAGAAAAGAAAAGAGTGAAAGAGAAAGAGAGGAAGCATCAAATCGAATTGGGCATTTGACCTTGGACTGCTGCACAACCACAGCGAAGCCAGGAGGTGGAGGCCGGAGGCCGGAGCGTGGAGGAACACACAACAACAACAACAACAACAAGAACACTCCTTTCTCTTGTTCTTCCATTCCTCATTCACATATCAAACCTCAATTTCTCAATTCTCATCTCATCCCATCACCCGGCCATCTGGCTATTCGGATACCGACCTCCCCTGCCCAAGATTCTTCGCAGTATATGCAAGTCGATCAGAACGACAAGTCTTTAGCTGTGAGGAATGATACGCAGAATGGGAGCTTCCCACATGCCGAATACATCTTCAACTACTCCAAGAAACTTGAAGAGGATCTACAGACGTTTGGAATGAAAATAAAGCAGCATGAGGACAACATTAAATTTCTCAAGACTCAGAAAAACAAATTAGATGAATCCATCCTCGACTTGCAAGTTATTCTAGGAAAGTATCATTCTTCTGGCACACCTGTGGCCGAAAACGAGGTTCATTCCCATCCTCAAAATGATGAGGAAACGATGGAACAGATTATGCGCCAGGAGAAGTCTGCTGCTAGCATTATATGTAAATTGAGCACACATCATGGTATTCAGGCTTACAACCTCATGTTGACCAAGGATGTATTGGGTATTGTTGCTCGGCTTGGAAAAGTTGATGATGATAATCTTAGCAGATTGCTCTCTGAGTACTTGGGAATGGAAACTATGCTGGCAATTGTCTGTAGAACATACGAGGGTGTTAAGGTGCTAGAAACATATGACAGGGAAGGTTGCATAAACAAAAGTCTTGGCCTTCATGGTCTTGGTGCTTCAATTGGGAGGAACTTGGATGGCCGACCATATGCTGGTGACTTTATTGCCAATGACCCACAAAGGAGGCTTGACCTTCTAAAGCCAAGATTACCTAACGGGGAGTGTCCACCTGGCTTTCTTGGCTTTGCTGTTAACATGATCAATATTGATAGCACACACTTGTTTTGTCTCGCAGCCAATGGATATGGTCTCAGGGAGACCCTGTTCTATTCTCTCTTTTCTCGTCTTCAAGTATATAAAACCAGAGCAGACATGCTACAAGCTCTCCCTTGCATTAGTGATGGTGCACTTTCTTTAGATGGAGGAATGATTAAAGCCACTGGTGTTTTTCTCTTGGGCAATCAGGAAGATGTTCAGTTGAGATTCCCAAAGGCCTCAATGAAATCAAGCCTACCTGAAAATTATATTGAATCTGAGAGGCAGATTAAAGAACTCAAGTGGAAAAAGGAAAAGATGGTTGAAGATATAAGGAGAGAACAATCATTACTGGACAATACTAAGCTCAATTTTGACAGGAAAAAGGCAGAGTTTCTAAAGTTCCTGACTGAAAGCTCATCATATGCAGCTCAGCAACAACTCTCAGCCAAGCCAGAGAGGTTGACACCACGATGA 1494 43.31 MRLRKEKSEREREEASNRIGHLTLDCCTTTAKPGGGGRRPERGGTHNNNNNNKNTPFSCSSIPHSHIKPQFLNSHLIPSPGHLAIRIPTSPAQDSSQYMQVDQNDKSLAVRNDTQNGSFPHAEYIFNYSKKLEEDLQTFGMKIKQHEDNIKFLKTQKNKLDESILDLQVILGKYHSSGTPVAENEVHSHPQNDEETMEQIMRQEKSAASIICKLSTHHGIQAYNLMLTKDVLGIVARLGKVDDDNLSRLLSEYLGMETMLAIVCRTYEGVKVLETYDREGCINKSLGLHGLGASIGRNLDGRPYAGDFIANDPQRRLDLLKPRLPNGECPPGFLGFAVNMINIDSTHLFCLAANGYGLRETLFYSLFSRLQVYKTRADMLQALPCISDGALSLDGGMIKATGVFLLGNQEDVQLRFPKASMKSSLPENYIESERQIKELKWKKEKMVEDIRREQSLLDNTKLNFDRKKAEFLKFLTESSSYAAQQQLSAKPERLTPR 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 319013 323892 + ClCG01G000420.1 Cla01g00042 263631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00042 497 Coils Coil 429 449 - -
Cla01g00042 497 MobiDBLite consensus disorder prediction 1 19 - -
Cla01g00042 497 PANTHER EN/SPM-LIKE TRANSPOSON-RELATED 117 488 - -
Cla01g00042 497 Coils Coil 5 25 - -
Cla01g00042 497 Coils Coil 129 163 - -
Cla01g00042 497 MobiDBLite consensus disorder prediction 1 59 - -
Cla01g00042 497 MobiDBLite consensus disorder prediction 43 59 - -
Cla01g00042 497 PANTHER PROTEIN DEFECTIVE IN MERISTEM SILENCING 3 117 488 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00042 - - - csv:101202858 768.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00042 Cla-Chr1:319013 Cla05g00972 Cla-Chr5:9811900 1.48E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1039 . . . Bda07g01934 Bpe03g00190 . . . . . . . Car02g00928 . Sed01g3490 Cpe05g00599 . Bhi01g01492 Tan01g0092 Cmetu06g0095 Lac11g0158 Hepe07g0059 Mch10g0057 . Cla01g00042 Cam01g0040 Cec01g0039 Cco01g0041 Clacu01g0042 Cmu01g0040 Cre09g2467 . Cone5ag0690 . . . Csa05g00048 Chy09g01439 . . Blo09g00026 . . . . . . . Cmo02g01147 . Cma16g00044 . . . . Cpe13g00317 . . . . . . . . . . . . . . Lsi09g00021 Csa03g01983 Chy06g01198 Cme09g01985
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001858 1 3 1 0 1 2 3 2 2 3 2 2 1 2 2 2 2 2 3 2 3 2 2 2 2 2 2 11 3 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g00042 Cla_Chr01 FPKM 15.381223 20.531776 24.217342 23.159372 21.524189 22.457064 21.85034 36.004333 36.391621 34.150249