Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g00045 ATGATCAACAACAACTACAACAAGCTTCACTCCTCCCGCTCCCTCGACTCTACTCCCGCCACCTCCTTCCACCTTTCCCCCAATGATCCTCCGCCACCTCCACCCTCCTCCTCCCTCCGCCGCCGCTCTCGTATCCTTATCATCTCCTTCCTCTCCGTCCTCCTCATCGCTGCCTCCGTGGTCTCCGCCGCCATGCTCGTCCGGTCCCATATCGCATCGAGCCAACCCAATTTCCCTCACAACAAGCCGTCCCAAGCCATCTCCCGAGCCTGCAGCCACACTCTGTACCCATCTCTCTGCCTCTCTTCTCTTCTCTCCTTCCCCGGCTCTCTCTCCGCCGACGTCCATGACCTTGTTCACATCTCTCTCAACTTAACTCTTCAACATCTCACCAAAGCTCTTTATTCCACTTCTCAAATCCCCATCTCCCAAATCTCCAACGACCCTTTAGCCCATTCCGCTTATGAAGACTGCATGGAGCTTCTAAACGACGCCGTTGACGCTTTTTCCCTCTCTCTCTTTTCCACTGAAGCTTCTAATCACGACGTCATGACGTGGCTTAGTGCGGCATTGACTTATCATGACACGTGTACGGATGGATTTGCGGATGTGGCTGACTTGGCAGTTAAGGATCAGGTGGAGGCGAAGTTGAGTGATTTGTCGGAGATGATTAGTAATTCTTTGGCTATATTTTCTGGGTTTGGTGGTGGGGATTTGCCGGTGGAGAATAGGCGCCGCCGCCGGTTGATGGAGAGTGGTACACAGCCGTGGGCGGCGGAGAATGGTGGTGATGGGGGTTTTCCACAGTGGGTGAGTGGGAAGGATCGGAGGCTTTTGGCTACTCCTATTTCGGCGATTCAGGCGGATATTGTGGTGGCTAAGGATGGTTCTGGCAAATTCAAGACGGTGGCTGAGGCCATTGACGCGGCTCCGTCGTCGAGTGGCCGCCGGATTGTTATCTACATTAAGGCCGGAAAGTACGAAGAGGAGAATTTGAAGGTGGGAAGGAAGAAAACAAACTTGATGTTTGTAGGAGATGGAAAGGGCATAACGGTCATTTCAGGTGGCAAAAGTATCTTTGACAAAGTTACCACTTTTCGCACCGCCACCTTTGCGGGTTCGGGAACAGGAATAATTTTAAGAGACATGACGTTTGAGAACACGGCAGGAGCAAGCAAGCACCAAGCAGTGGCATTGCGCTTGAGCGCTGACCACGCTGTGGTATACCGTTGCAACATCATTGGTTATCAAGACACTCTCTATGTGCACTCAAACCGCCAATTCTTTCGAGAATGCGACATCTACGGTACGGTGGACTTCATCTTTGGGAATGCGGTAGTTGTGTTCCAAAGTTGCAACATCTATGCCCGAAAGCCAATGGCGGGGCAAAAGAACACCATCACTGCCCAAGACCGGAAGGACCCAAACCAAAACACTGGAATCTCCATCCATGCTTGTAAGATCATTGCCACTAGCGACCTCGAAGCCTCCAAGGGTTCTTTCCCCACCTACCTAGGTCGTCCTTGGAAATTATACTCTAGAGTGGTGTACATGGTATCTTCCATGGGCGACCATATTCATCCACGTGGTTGGCTGGAGTGGCAAGGTTCTTTTGCTCTCGACACTCTTTACTACGGCGAGTATATGAATTCTGGGCCAGGTGCCGCTGTGGGGCAGCGGGTCAAGTGGCCGGGTTATCGGGTTATAACTTCCACGGTAGAAGCCTCCAAATTTACTGTTGGACAATTCATTTATGGCTCTTCTTGGTTGCCCTCCACTGGAGTCTCCTTTTCAGCTGGATTATCCGCTAACTAA 1815 51.63 MINNNYNKLHSSRSLDSTPATSFHLSPNDPPPPPPSSSLRRRSRILIISFLSVLLIAASVVSAAMLVRSHIASSQPNFPHNKPSQAISRACSHTLYPSLCLSSLLSFPGSLSADVHDLVHISLNLTLQHLTKALYSTSQIPISQISNDPLAHSAYEDCMELLNDAVDAFSLSLFSTEASNHDVMTWLSAALTYHDTCTDGFADVADLAVKDQVEAKLSDLSEMISNSLAIFSGFGGGDLPVENRRRRRLMESGTQPWAAENGGDGGFPQWVSGKDRRLLATPISAIQADIVVAKDGSGKFKTVAEAIDAAPSSSGRRIVIYIKAGKYEEENLKVGRKKTNLMFVGDGKGITVISGGKSIFDKVTTFRTATFAGSGTGIILRDMTFENTAGASKHQAVALRLSADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAVVVFQSCNIYARKPMAGQKNTITAQDRKDPNQNTGISIHACKIIATSDLEASKGSFPTYLGRPWKLYSRVVYMVSSMGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSTVEASKFTVGQFIYGSSWLPSTGVSFSAGLSAN 604
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 336726 342333 - ClCG01G000440.1 Cla01g00045 263634
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla01g00045 604 Pfam Plant invertase/pectin methylesterase inhibitor 86 230 IPR006501 GO:0004857
Cla01g00045 604 ProSitePatterns Pectinesterase signature 2. 434 443 IPR033131 -
Cla01g00045 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 85 232 IPR035513 -
Cla01g00045 604 Pfam Pectinesterase 289 586 IPR000070 GO:0030599|GO:0042545
Cla01g00045 604 MobiDBLite consensus disorder prediction 1 24 - -
Cla01g00045 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 84 234 IPR035513 -
Cla01g00045 604 SMART PMEI_2 82 230 IPR006501 GO:0004857
Cla01g00045 604 SUPERFAMILY Pectin lyase-like 284 600 IPR011050 -
Cla01g00045 604 TIGRFAM PME_inhib: pectinesterase inhibitor domain 59 232 IPR006501 GO:0004857
Cla01g00045 604 CDD PMEI-like_3 90 236 - -
Cla01g00045 604 PANTHER PECTINESTERASE 38 601 - -
Cla01g00045 604 MobiDBLite consensus disorder prediction 1 39 - -
Cla01g00045 604 Gene3D - 283 601 IPR012334 -
Cla01g00045 604 PANTHER PECTINESTERASE 38 601 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cla01g00045 Cla05g00966 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00045 Cla-Chr1:336726 Cla09g00512 Cla-Chr9:4846710 6.07E-175 dispersed
Cla10g00572 Cla-Chr10:8230132 Cla01g00045 Cla-Chr1:336726 3.00E-136 dispersed
Cla10g00004 Cla-Chr10:132994 Cla01g00045 Cla-Chr1:336726 4.22E-151 transposed
Cla01g00045 Cla-Chr1:336726 Cla05g00966 Cla-Chr5:9738714 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g00045 - - csv:101216816 1035.79